Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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ATCG00380 - ( Chloroplast encoded ribosomal protein S4 )

68 Proteins interacs with ATCG00380
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G09660

Predicted

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FSW = 0.0020

Class C:

plastid

 PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT2G36990

Predicted

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FSW = 0.1551

Class C:

plastid

 SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ SIGMA FACTOR/ TRANSCRIPTION FACTOR
AT3G63490

Predicted

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FSW = 0.4228

Class C:

plastid

 RIBOSOMAL PROTEIN L1 FAMILY PROTEIN
AT2G33800

Predicted

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FSW = 0.5018

Class C:

plastid

 RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT1G48420

Predicted

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FSW = 0.1371

Class C:

plastid

 D-CDES (D-CYSTEINE DESULFHYDRASE) 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE/ D-CYSTEINE DESULFHYDRASE/ CATALYTIC
AT2G25840

Predicted

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FSW = 0.0385

Class C:

plastid

 OVA4 (OVULE ABORTION 4) ATP BINDING / AMINOACYL-TRNA LIGASE/ NUCLEOTIDE BINDING / TRYPTOPHAN-TRNA LIGASE
AT4G30690

Predicted

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FSW = 0.2317

Class C:

plastid

 TRANSLATION INITIATION FACTOR 3 (IF-3) FAMILY PROTEIN
AT4G34620

Predicted

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FSW = 0.3322

Class C:

plastid

 SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G02260

Predicted

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FSW = 0.2190

Class C:

plastid

 RSH1 (RELA-SPOT HOMOLOG 1) CATALYTIC
AT1G19690

Predicted

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FSW = 0.0322

Class C:

plastid

 BINDING / CATALYTIC/ COENZYME BINDING
AT2G04270

Predicted

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FSW = 0.1754

Class C:

plastid

 RNEE/G (RNASE E/G-LIKE) ENDORIBONUCLEASE
AT5G14320

Predicted

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FSW = 0.2474

Class C:

plastid

 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13)
AT1G31860

Predicted

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FSW = 0.0714

Class C:

plastid

 AT-IE PHOSPHORIBOSYL-AMP CYCLOHYDROLASE/ PHOSPHORIBOSYL-ATP DIPHOSPHATASE
AT5G66470

Predicted

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FSW = 0.1511

Class C:

plastid

 GTP BINDING / RNA BINDING
AT2G22230

Predicted

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FSW = 0.1635

Class C:

plastid

 BETA-HYDROXYACYL-ACP DEHYDRATASE PUTATIVE
AT1G63970

Predicted

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FSW = 0.0451

Class C:

plastid

 ISPF 2-C-METHYL-D-ERYTHRITOL 24-CYCLODIPHOSPHATE SYNTHASE
AT3G03710

Predicted

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FSW = 0.2492

Class C:

plastid

 RIF10 (RESISTANT TO INHIBITION WITH FSM 10) 3-5-EXORIBONUCLEASE/ RNA BINDING / NUCLEIC ACID BINDING / POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
AT4G20960

Predicted

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FSW = 0.0461

Class C:

plastid

 CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN
AT5G30510

Predicted

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FSW = 0.3096

Class C:

plastid

 RPS1 (RIBOSOMAL PROTEIN S1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G53920

Predicted

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FSW = 0.0556

Class C:

plastid

 RIBOSOMAL PROTEIN L11 METHYLTRANSFERASE-RELATED
AT5G55220

Predicted

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FSW = 0.1093

Class C:

plastid

 TRIGGER FACTOR TYPE CHAPERONE FAMILY PROTEIN
AT5G55280

Predicted

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FSW = 0.0172

Class C:

plastid

 FTSZ1-1 PROTEIN BINDING / STRUCTURAL MOLECULE
AT5G03940

Predicted

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FSW = 0.0806

Class C:

plastid

 CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / SIGNAL SEQUENCE BINDING
ATCG00180Predicted

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FSW = 0.2875

Class C:

plastid

 RNA POLYMERASE BETA SUBUNIT-1
ATCG00330Predicted

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FSW = 0.2551

Class C:

plastid

 30S CHLOROPLAST RIBOSOMAL PROTEIN S14
ATCG00740Predicted

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FSW = 0.3333

Class C:

plastid

 RNA POLYMERASE ALPHA SUBUNIT
ATCG00790Predicted

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FSW = 0.1513

Class C:

plastid

 CHLOROPLAST GENE ENCODING A RIBOSOMAL PROTEIN L16 WHICH IS A CONSTITUENT OF 50S LARGE RIBOSOMAL SUBUNIT
ATCG00820Predicted

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FSW = 0.2634

Class C:

plastid

 ENCODES A 68-KDA PROTEIN OF THE SMALL RIBOSOMAL SUBUNIT
ATCG00800Predicted

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FSW = 0.4827

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00830Predicted

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FSW = 0.4155

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG01240Predicted

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FSW = 0.5075

Class C:

plastid

 30S CHLOROPLAST RIBOSOMAL PROTEIN S7
AT3G02870

Predicted

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FSW = 0.0200

Unknown

 VTC4 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ L-GALACTOSE-1-PHOSPHATE PHOSPHATASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE
AT4G38680

Predicted

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FSW = 0.2378

Unknown

 GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT4G18360

Predicted

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FSW = 0.0161

Unknown

 (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE
AT1G75230

Predicted

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FSW = 0.0614

Unknown

 HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN
AT3G09210

Predicted

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FSW = 0.1693

Unknown

 PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13) TRANSCRIPTION ELONGATION REGULATOR
AT4G25340

Predicted

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FSW = 0.0032

Unknown

 IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT4G15940

Predicted

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FSW = 0.0333

Unknown

 FUMARYLACETOACETATE HYDROLASE FAMILY PROTEIN
AT4G11060

Predicted

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FSW = 0.0950

Unknown

 MTSSB (MITOCHONDRIALLY TARGETED SINGLE-STRANDED DNA BINDING PROTEIN) SINGLE-STRANDED DNA BINDING
AT2G46110

Predicted

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FSW = 0.0161

Unknown

 KPHMT1 (KETOPANTOATE HYDROXYMETHYLTRANSFERASE 1) 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE
AT3G10370

Predicted

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FSW = 0.0300

Unknown

 SDP6 (SUGAR-DEPENDENT 6) GLYCEROL-3-PHOSPHATE DEHYDROGENASE
AT1G79500

Predicted

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FSW = 0.1151

Unknown

 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE / PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE / 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE (KDSA)
AT5G10620

Predicted

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FSW = 0.0556

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 11 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SPOUT METHYLTRANSFERASE PREDICTED (INTERPROIPR003742) HAS 3142 BLAST HITS TO 3142 PROTEINS IN 1101 SPECIES ARCHAE - 27 BACTERIA - 2338 METAZOA - 0 FUNGI - 0 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 755 (SOURCE NCBI BLINK)
AT1G45110

Predicted

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FSW = 0.0563

Unknown

 TETRAPYRROLE METHYLASE FAMILY PROTEIN
AT1G62850

Predicted

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FSW = 0.1075

Unknown

 TRANSLATION RELEASE FACTOR
AT1G66520

Predicted

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FSW = 0.1385

Unknown

 PDE194 (PIGMENT DEFECTIVE 194) CATALYTIC/ FORMYLTETRAHYDROFOLATE DEFORMYLASE/ HYDROXYMETHYL- FORMYL- AND RELATED TRANSFERASE
AT1G73740

Predicted

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FSW = 0.0751

Unknown

 GLYCOSYL TRANSFERASE FAMILY 28 PROTEIN
AT1G80620

Predicted

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FSW = 0.2420

Unknown

 RIBOSOMAL PROTEIN S15 FAMILY PROTEIN
AT2G01440

Predicted

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FSW = 0.2963

Unknown

 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT2G16930

Predicted

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FSW = 0.1289

Unknown

 RIBOSOMAL PROTEIN L27 FAMILY PROTEIN
AT2G17510

Predicted

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FSW = 0.2276

Unknown

 EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE
AT2G20060

Predicted

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FSW = 0.4815

Unknown

 RIBOSOMAL PROTEIN L4 FAMILY PROTEIN
AT2G26470

Predicted

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FSW = 0.0877

Unknown

 UNKNOWN PROTEIN
AT2G39140

Predicted

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FSW = 0.0960

Unknown

 SVR1 (SUPPRESSOR OF VARIEGATION 1) RNA BINDING / PSEUDOURIDINE SYNTHASE
AT3G03500

Predicted

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FSW = 0.0376

Unknown

 TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT3G13180

Predicted

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FSW = 0.1847

Unknown

 NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN
AT3G22310

Predicted

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FSW = 0.3499

Unknown

 PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING
AT3G49080

Predicted

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FSW = 0.3991

Unknown

 RIBOSOMAL PROTEIN S9 FAMILY PROTEIN
AT4G04950

Predicted

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FSW = 0.0199

Unknown

 THIOREDOXIN FAMILY PROTEIN
AT4G21220

Predicted

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FSW = 0.1889

Unknown

 BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN
AT4G25730

Predicted

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FSW = 0.0600

Unknown

 FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN
AT4G29540

Predicted

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FSW = 0.0483

Unknown

 BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN
AT4G34710

Predicted

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FSW = 0.1612

Unknown

 ADC2 (ARGININE DECARBOXYLASE 2) ARGININE DECARBOXYLASE
AT4G36020

Predicted

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FSW = 0.1756

Unknown

 CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT5G51140

Predicted

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FSW = 0.2925

Unknown

 PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT5G63120

Predicted

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FSW = 0.1975

Unknown

 ETHYLENE-RESPONSIVE DEAD BOX RNA HELICASE PUTATIVE (RH30)
AT5G64650

Predicted

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FSW = 0.3574

Unknown

 RIBOSOMAL PROTEIN L17 FAMILY PROTEIN
ATCG01230Predicted

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FSW = 0.1888

Unknown

 CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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