Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G44900 - ( ATP binding / DNA binding / DNA-dependent ATPase )
45 Proteins interacs with AT1G44900Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G14960 | Predictedinterologs mapping | FSW = 0.0034
| Class C:nucleus | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G06510 | PredictedAffinity Capture-WesternCo-expression | FSW = 0.1179
| Class C:nucleus | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT3G58510 | PredictedSynthetic Rescue | FSW = 0.0269
| Class C:nucleus | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
AT2G24490 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.1366
| Class C:nucleus | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT3G02920 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.2123
| Class C:nucleus | REPLICATION PROTEIN-RELATED |
AT3G13445 | Predictedin vitro | FSW = 0.0098
| Class C:nucleus | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT3G61420 | Predictedin vitro | FSW = 0.0216
| Class C:nucleus | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S KELCH RELATED (INTERPROIPR013089) BSD (INTERPROIPR005607) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TRANSCRIPTION FACTOR-RELATED (TAIRAT1G557501) HAS 247 BLAST HITS TO 247 PROTEINS IN 115 SPECIES ARCHAE - 1 BACTERIA - 0 METAZOA - 116 FUNGI - 84 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT5G45400 | Predictedtwo hybridCo-expression | FSW = 0.1479
| Class C:nucleus | REPLICATION PROTEIN PUTATIVE |
AT5G61000 | Predictedtwo hybrid | FSW = 0.1683
| Class C:nucleus | REPLICATION PROTEIN PUTATIVE |
AT4G02060 | Predictedin vivoin vivoin vivoin vivoCo-purificationColocalizationco-fractionationCo-fractionationAffinity Capture-MSAffinity Capture-WesternCo-purificationCo-purificationtwo hybridReconstituted Complexin vivoReconstituted Complextwo hybridAffinity Capture-MSCo-purificationColocalizationco-fractionationCo-fractionationSynthetic LethalityAffinity Capture-WesternCo-expression | FSW = 0.3750
| Class C:nucleus | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G41630 | Predictedin vitro | FSW = 0.0251
| Class C:nucleus | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT1G55520 | Predictedin vitro | FSW = 0.0113
| Class C:nucleus | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT1G55750 | Predictedin vitro | FSW = 0.0217
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
AT4G01370 | Predictedbiochemical | FSW = 0.0187
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT5G53460 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0294
| Unknown | GLT1 GLUTAMATE SYNTHASE (NADH) |
AT3G48190 | Predictedbiochemical | FSW = 0.0294
| Unknown | ATM (ATAXIA-TELANGIECTASIA MUTATED) 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE |
AT1G80190 | PredictedAffinity Capture-Western | FSW = 0.0467
| Unknown | PSF1 (PARTNER OF SLD FIVE 1) |
AT5G63960 | Predictedsynthetic growth defect | FSW = 0.0334
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G12530 | PredictedAffinity Capture-Western | FSW = 0.0510
| Unknown | PSF2 |
AT2G42120 | Predictedsynthetic growth defect | FSW = 0.0269
| Unknown | POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT2G37560 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-Westernin vitroin vivoCo-expression | FSW = 0.2786
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT5G40820 | Predictedbiochemical | FSW = 0.1013
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT5G51660 | Predictedin vitroCo-expression | FSW = 0.0090
| Unknown | CPSF160 NUCLEIC ACID BINDING |
AT2G01120 | Predictedtwo hybridAffinity Capture-MSCo-expression | FSW = 0.2837
| Unknown | ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) PROTEIN BINDING |
AT2G07690 | Predictedtwo hybridColocalizationco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerntwo hybridAffinity Capture-MSAffinity Capture-WesternColocalizationco-fractionationCo-fractionationinteraction predictionCo-expression | FSW = 0.3375
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT2G16440 | PredictedCo-purificationColocalizationColocalizationco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-WesternSynthetic LethalityAffinity Capture-WesternAffinity Capture-WesternColocalizationtwo hybridReconstituted Complextwo hybridColocalizationCo-purificationco-fractionationCo-fractionationSynthetic LethalityAffinity Capture-WesternCo-expression | FSW = 0.5051
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT2G20980 | Predictedtwo hybridin vivoin vitrotwo hybridAffinity Capture-MSSynthetic Lethality | FSW = 0.3988
| Unknown | MCM10 |
AT4G12620 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.2514
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT4G16970 | Predictedbiochemicalbiochemicalbiochemicalsynthetic growth defectsynthetic growth defecttwo hybridbiochemicalbiochemicalbiochemicaltwo hybridtwo hybridin vitroin vitrobiochemicalsynthetic growth defectAffinity Capture-Western | FSW = 0.1894
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G29910 | Predictedtwo hybridCo-expression | FSW = 0.1132
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT5G44635 | Predictedtwo hybridtwo hybridCo-purificationColocalizationco-fractionationCo-fractionationAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexReconstituted ComplexAffinity Capture-MSColocalizationCo-purificationco-fractionationCo-fractionationAffinity Capture-Westernin vitroin vivo | FSW = 0.2170
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT5G46280 | Predictedtwo hybridSynthetic Lethalityinterologs mappingColocalizationco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerninterologs mappingColocalizationAffinity Capture-WesternAffinity Capture-Westerntwo hybridAffinity Capture-MSAffinity Capture-WesternColocalizationco-fractionationCo-fractionationinterologs mappingSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.3174
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT1G07270 | Predictedtwo hybridReconstituted Complexsynthetic growth defectinteraction prediction | FSW = 0.1360
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT1G08260 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0338
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT1G67190 | PredictedAffinity Capture-MS | FSW = 0.0374
| Unknown | F-BOX FAMILY PROTEIN |
AT1G78580 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0388
| Unknown | ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE) ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G79150 | PredictedAffinity Capture-WesternCo-expression | FSW = 0.0638
| Unknown | BINDING |
AT1G79890 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.0589
| Unknown | HELICASE-RELATED |
AT3G25100 | Predictedinteraction predictionSynthetic LethalityAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSSynthetic LethalityAffinity Capture-MSsynthetic growth defectSynthetic RescueColocalizationCo-expression | FSW = 0.1911
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT5G49010 | PredictedAffinity Capture-MS | FSW = 0.1807
| Unknown | SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) |
AT5G56740 | PredictedAffinity Capture-MSsynthetic growth defectinteraction predictionCo-expression | FSW = 0.0400
| Unknown | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT2G44580 | PredictedSynthetic Lethality | FSW = 0.0370
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G20610 | PredictedPhenotypic Suppression | FSW = 0.0363
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G16980 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0204
| Unknown | ATTPS2 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT5G08415 | Predictedinteraction predictiontwo hybrid | FSW = 0.0208
| Unknown | LIPOIC ACID SYNTHASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454