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AT1G44900 - ( ATP binding / DNA binding / DNA-dependent ATPase )

45 Proteins interacs with AT1G44900

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G14960	Predicted interologs mapping	FSW = 0.0034	Class C: nucleus	TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G06510	Predicted Affinity Capture-Western Co-expression	FSW = 0.1179	Class C: nucleus	RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING
AT3G58510	Predicted Synthetic Rescue	FSW = 0.0269	Class C: nucleus	DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT2G24490	Predicted two hybrid Affinity Capture-MS	FSW = 0.1366	Class C: nucleus	RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT3G02920	Predicted two hybrid Affinity Capture-MS	FSW = 0.2123	Class C: nucleus	REPLICATION PROTEIN-RELATED
AT3G13445	Predicted in vitro	FSW = 0.0098	Class C: nucleus	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT3G61420	Predicted in vitro	FSW = 0.0216	Class C: nucleus	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S KELCH RELATED (INTERPROIPR013089) BSD (INTERPROIPR005607) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TRANSCRIPTION FACTOR-RELATED (TAIRAT1G557501) HAS 247 BLAST HITS TO 247 PROTEINS IN 115 SPECIES ARCHAE - 1 BACTERIA - 0 METAZOA - 116 FUNGI - 84 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT5G45400	Predicted two hybrid Co-expression	FSW = 0.1479	Class C: nucleus	REPLICATION PROTEIN PUTATIVE
AT5G61000	Predicted two hybrid	FSW = 0.1683	Class C: nucleus	REPLICATION PROTEIN PUTATIVE
AT4G02060	Predicted in vivo in vivo in vivo in vivo Co-purification Colocalization co-fractionation Co-fractionation Affinity Capture-MS Affinity Capture-Western Co-purification Co-purification two hybrid Reconstituted Complex in vivo Reconstituted Complex two hybrid Affinity Capture-MS Co-purification Colocalization co-fractionation Co-fractionation Synthetic Lethality Affinity Capture-Western Co-expression	FSW = 0.3750	Class C: nucleus	PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT2G41630	Predicted in vitro	FSW = 0.0251	Class C: nucleus	TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT1G55520	Predicted in vitro	FSW = 0.0113	Class C: nucleus	TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT1G55750	Predicted in vitro	FSW = 0.0217	Class C: nucleus	TRANSCRIPTION FACTOR-RELATED
AT4G01370	Predicted biochemical	FSW = 0.0187	Unknown	ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE
AT5G53460	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0294	Unknown	GLT1 GLUTAMATE SYNTHASE (NADH)
AT3G48190	Predicted biochemical	FSW = 0.0294	Unknown	ATM (ATAXIA-TELANGIECTASIA MUTATED) 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE
AT1G80190	Predicted Affinity Capture-Western	FSW = 0.0467	Unknown	PSF1 (PARTNER OF SLD FIVE 1)
AT5G63960	Predicted synthetic growth defect	FSW = 0.0334	Unknown	EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G12530	Predicted Affinity Capture-Western	FSW = 0.0510	Unknown	PSF2
AT2G42120	Predicted synthetic growth defect	FSW = 0.0269	Unknown	POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT2G37560	Predicted two hybrid Affinity Capture-MS Affinity Capture-Western in vitro in vivo Co-expression	FSW = 0.2786	Unknown	ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING
AT5G40820	Predicted biochemical	FSW = 0.1013	Unknown	ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE
AT5G51660	Predicted in vitro Co-expression	FSW = 0.0090	Unknown	CPSF160 NUCLEIC ACID BINDING
AT2G01120	Predicted two hybrid Affinity Capture-MS Co-expression	FSW = 0.2837	Unknown	ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) PROTEIN BINDING
AT2G07690	Predicted two hybrid Colocalization co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western two hybrid Affinity Capture-MS Affinity Capture-Western Colocalization co-fractionation Co-fractionation interaction prediction Co-expression	FSW = 0.3375	Unknown	MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN
AT2G16440	Predicted Co-purification Colocalization Colocalization co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-Western Synthetic Lethality Affinity Capture-Western Affinity Capture-Western Colocalization two hybrid Reconstituted Complex two hybrid Colocalization Co-purification co-fractionation Co-fractionation Synthetic Lethality Affinity Capture-Western Co-expression	FSW = 0.5051	Unknown	DNA REPLICATION LICENSING FACTOR PUTATIVE
AT2G20980	Predicted two hybrid in vivo in vitro two hybrid Affinity Capture-MS Synthetic Lethality	FSW = 0.3988	Unknown	MCM10
AT4G12620	Predicted two hybrid Affinity Capture-MS	FSW = 0.2514	Unknown	ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING
AT4G16970	Predicted biochemical biochemical biochemical synthetic growth defect synthetic growth defect two hybrid biochemical biochemical biochemical two hybrid two hybrid in vitro in vitro biochemical synthetic growth defect Affinity Capture-Western	FSW = 0.1894	Unknown	ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G29910	Predicted two hybrid Co-expression	FSW = 0.1132	Unknown	ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING
AT5G44635	Predicted two hybrid two hybrid Co-purification Colocalization co-fractionation Co-fractionation Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Reconstituted Complex Reconstituted Complex Affinity Capture-MS Colocalization Co-purification co-fractionation Co-fractionation Affinity Capture-Western in vitro in vivo	FSW = 0.2170	Unknown	MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN
AT5G46280	Predicted two hybrid Synthetic Lethality interologs mapping Colocalization co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western interologs mapping Colocalization Affinity Capture-Western Affinity Capture-Western two hybrid Affinity Capture-MS Affinity Capture-Western Colocalization co-fractionation Co-fractionation interologs mapping Synthetic Lethality interaction prediction Co-expression	FSW = 0.3174	Unknown	DNA REPLICATION LICENSING FACTOR PUTATIVE
AT1G07270	Predicted two hybrid Reconstituted Complex synthetic growth defect interaction prediction	FSW = 0.1360	Unknown	CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B)
AT1G08260	Predicted Affinity Capture-MS Co-expression	FSW = 0.0338	Unknown	TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT1G67190	Predicted Affinity Capture-MS	FSW = 0.0374	Unknown	F-BOX FAMILY PROTEIN
AT1G78580	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0388	Unknown	ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE) ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT1G79150	Predicted Affinity Capture-Western Co-expression	FSW = 0.0638	Unknown	BINDING
AT1G79890	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.0589	Unknown	HELICASE-RELATED
AT3G25100	Predicted interaction prediction Synthetic Lethality Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Synthetic Lethality Affinity Capture-MS synthetic growth defect Synthetic Rescue Colocalization Co-expression	FSW = 0.1911	Unknown	CDC45 (CELL DIVISION CYCLE 45)
AT5G49010	Predicted Affinity Capture-MS	FSW = 0.1807	Unknown	SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5)
AT5G56740	Predicted Affinity Capture-MS synthetic growth defect interaction prediction Co-expression	FSW = 0.0400	Unknown	HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT2G44580	Predicted Synthetic Lethality	FSW = 0.0370	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT1G20610	Predicted Phenotypic Suppression	FSW = 0.0363	Unknown	CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G16980	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0204	Unknown	ATTPS2 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT5G08415	Predicted interaction prediction two hybrid	FSW = 0.0208	Unknown	LIPOIC ACID SYNTHASE FAMILY PROTEIN

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Fasta sequences:

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT1G44900 - ( ATP binding / DNA binding / DNA-dependent ATPase )

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Fasta sequences:

Quick help

FSW

C3

PEP

How to cite