Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G20060 - ( ribosomal protein L4 family protein )

77 Proteins interacs with AT2G20060
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G41790

Predicted

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FSW = 0.1626

Unknown

 CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING
AT4G37910

Predicted

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FSW = 0.1299

Unknown

 MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT1G53000

Predicted

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FSW = 0.1071

Unknown

 CYTIDYLYLTRANSFERASE FAMILY
AT2G36990

Predicted

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FSW = 0.2251

Unknown

 SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ SIGMA FACTOR/ TRANSCRIPTION FACTOR
AT2G33800

Predicted

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FSW = 0.5398

Unknown

 RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT3G63490

Predicted

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FSW = 0.4048

Unknown

 RIBOSOMAL PROTEIN L1 FAMILY PROTEIN
AT1G48420

Predicted

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FSW = 0.1537

Unknown

 D-CDES (D-CYSTEINE DESULFHYDRASE) 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE/ D-CYSTEINE DESULFHYDRASE/ CATALYTIC
AT5G14660

Predicted

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FSW = 0.0125

Unknown

 PDF1B (PEPTIDE DEFORMYLASE 1B) IRON ION BINDING / PEPTIDE DEFORMYLASE
AT5G23140

Predicted

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FSW = 0.2173

Unknown

 NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE
AT1G62750

Predicted

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FSW = 0.0325

Unknown

 SCO1 (SNOWY COTYLEDON 1) ATP BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT1G50840

Predicted

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FSW = 0.1417

Unknown

 POLGAMMA2 (POLYMERASE GAMMA 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT3G59760

Predicted

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FSW = 0.0159

Unknown

 OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C) ATP BINDING / CYSTEINE SYNTHASE
AT5G64050

Predicted

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FSW = 0.0459

Unknown

 ERS (GLUTAMATE TRNA SYNTHETASE) GLUTAMATE-TRNA LIGASE
AT4G30690

Predicted

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FSW = 0.2915

Unknown

 TRANSLATION INITIATION FACTOR 3 (IF-3) FAMILY PROTEIN
AT4G34620

Predicted

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FSW = 0.3853

Unknown

 SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G02260

Predicted

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FSW = 0.2970

Unknown

 RSH1 (RELA-SPOT HOMOLOG 1) CATALYTIC
AT4G01800

Predicted

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FSW = 0.2243

Unknown

 PREPROTEIN TRANSLOCASE SECA SUBUNIT PUTATIVE
AT2G04270

Predicted

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FSW = 0.3457

Unknown

 RNEE/G (RNASE E/G-LIKE) ENDORIBONUCLEASE
AT3G13120

Predicted

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FSW = 0.3678

Unknown

 30S RIBOSOMAL PROTEIN S10 CHLOROPLAST PUTATIVE
AT5G14320

Predicted

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FSW = 0.2567

Unknown

 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13)
AT2G22230

Predicted

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FSW = 0.2830

Unknown

 BETA-HYDROXYACYL-ACP DEHYDRATASE PUTATIVE
AT1G18440

Predicted

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FSW = 0.1552

Unknown

 PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN
AT3G03710

Predicted

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FSW = 0.2935

Unknown

 RIF10 (RESISTANT TO INHIBITION WITH FSM 10) 3-5-EXORIBONUCLEASE/ RNA BINDING / NUCLEIC ACID BINDING / POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
AT3G18680

Predicted

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FSW = 0.2863

Unknown

 ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN
AT4G04350

Predicted

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FSW = 0.0992

Unknown

 EMB2369 (EMBRYO DEFECTIVE 2369) ATP BINDING / AMINOACYL-TRNA LIGASE/ LEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT4G20960

Predicted

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FSW = 0.1294

Unknown

 CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN
AT4G34350

Predicted

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FSW = 0.0433

Unknown

 HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE) 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE REDUCTASE/ 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE
AT5G08650

Predicted

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FSW = 0.1432

Unknown

 GTP-BINDING PROTEIN LEPA PUTATIVE
AT5G42270

Predicted

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FSW = 0.0415

Unknown

 VAR1 (VARIEGATED 1) ATP-DEPENDENT PEPTIDASE/ ATPASE/ METALLOPEPTIDASE
AT5G55220

Predicted

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FSW = 0.2199

Unknown

 TRIGGER FACTOR TYPE CHAPERONE FAMILY PROTEIN
AT4G01310

Predicted

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FSW = 0.2658

Unknown

 RIBOSOMAL PROTEIN L5 FAMILY PROTEIN
AT1G05190

Predicted

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FSW = 0.2055

Unknown

 EMB2394 (EMBRYO DEFECTIVE 2394) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G78630

Predicted

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FSW = 0.4266

Unknown

 EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G32990

Predicted

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FSW = 0.3791

Unknown

 PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G03940

Predicted

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FSW = 0.1299

Unknown

 CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / SIGNAL SEQUENCE BINDING
AT2G43030

Predicted

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FSW = 0.3165

Unknown

 RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
ATCG00190Predicted

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FSW = 0.2874

Unknown

 CHLOROPLAST DNA-DEPENDENT RNA POLYMERASE B SUBUNIT THE TRANSCRIPTION OF THIS GENE IS REGULATED BY A NUCLEAR ENCODED RNA POLYMERASE THIS GENE HAS BEEN TRANSFERRED TO MITOCHONDRIAL GENOME DURING CRUCIFER EVOLUTION
ATCG00740Predicted

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FSW = 0.3804

Unknown

 RNA POLYMERASE ALPHA SUBUNIT
ATCG00160Predicted

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FSW = 0.3342

Unknown

 CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00180Predicted

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FSW = 0.3656

Unknown

 RNA POLYMERASE BETA SUBUNIT-1
ATCG00380Predicted

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FSW = 0.4815

Unknown

 CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4
ATCG00750Predicted

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FSW = 0.1382

Unknown

 30S CHLOROPLAST RIBOSOMAL PROTEIN S11
ATCG00780Predicted

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FSW = 0.1684

Unknown

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L14 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00800Predicted

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FSW = 0.4613

Unknown

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00810Predicted

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FSW = 0.3654

Unknown

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00830Predicted

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FSW = 0.3217

Unknown

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG01240Predicted

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FSW = 0.5472

Unknown

 30S CHLOROPLAST RIBOSOMAL PROTEIN S7
AT3G02870

Predicted

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FSW = 0.0178

Unknown

 VTC4 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ L-GALACTOSE-1-PHOSPHATE PHOSPHATASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE
AT4G38680

Predicted

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FSW = 0.2870

Unknown

 GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT1G75230

Predicted

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FSW = 0.0692

Unknown

 HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN
AT3G09210

Predicted

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FSW = 0.3038

Unknown

 PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13) TRANSCRIPTION ELONGATION REGULATOR
AT4G02580

Predicted

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FSW = 0.0411

Unknown

 NADH-UBIQUINONE OXIDOREDUCTASE 24 KDA SUBUNIT PUTATIVE
AT4G11060

Predicted

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FSW = 0.2533

Unknown

 MTSSB (MITOCHONDRIALLY TARGETED SINGLE-STRANDED DNA BINDING PROTEIN) SINGLE-STRANDED DNA BINDING
AT4G02930

Predicted

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FSW = 0.2215

Unknown

 ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE
AT2G45240

Predicted

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FSW = 0.1337

Unknown

 MAP1A (METHIONINE AMINOPEPTIDASE 1A) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE
AT2G18230

Predicted

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FSW = 0.1415

Unknown

 ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT1G79500

Predicted

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FSW = 0.3023

Unknown

 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE / PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE / 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE (KDSA)
AT1G26550

Predicted

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FSW = 0.0952

Unknown

 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PPIC-TYPE FAMILY PROTEIN
AT1G62850

Predicted

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FSW = 0.0961

Unknown

 TRANSLATION RELEASE FACTOR
AT1G66520

Predicted

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FSW = 0.1003

Unknown

 PDE194 (PIGMENT DEFECTIVE 194) CATALYTIC/ FORMYLTETRAHYDROFOLATE DEFORMYLASE/ HYDROXYMETHYL- FORMYL- AND RELATED TRANSFERASE
AT2G01440

Predicted

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FSW = 0.2066

Unknown

 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT2G17510

Predicted

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FSW = 0.2555

Unknown

 EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE
AT2G41530

Predicted

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FSW = 0.0051

Unknown

 SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS
AT2G47020

Predicted

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FSW = 0.0222

Unknown

 PEPTIDE CHAIN RELEASE FACTOR PUTATIVE
AT3G13180

Predicted

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FSW = 0.1398

Unknown

 NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN
AT3G22310

Predicted

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FSW = 0.3745

Unknown

 PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING
AT4G21220

Predicted

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FSW = 0.2500

Unknown

 BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN
AT4G25730

Predicted

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FSW = 0.1157

Unknown

 FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN
AT4G26780

Predicted

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FSW = 0.0909

Unknown

 AR192 ADENYL-NUCLEOTIDE EXCHANGE FACTOR/ CHAPERONE BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION
AT4G31150

Predicted

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FSW = 0.1294

Unknown

 ENDONUCLEASE V FAMILY PROTEIN
AT4G36020

Predicted

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FSW = 0.1757

Unknown

 CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT5G37530

Predicted

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FSW = 0.0646

Unknown

 THIF FAMILY PROTEIN
AT5G51140

Predicted

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FSW = 0.3998

Unknown

 PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT5G55000

Predicted

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FSW = 0.0278

Unknown

 FIP2 PROTEIN BINDING / VOLTAGE-GATED POTASSIUM CHANNEL
AT5G63120

Predicted

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FSW = 0.2481

Unknown

 ETHYLENE-RESPONSIVE DEAD BOX RNA HELICASE PUTATIVE (RH30)
AT5G23535

Predicted

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FSW = 0.2793

Unknown

 KOW DOMAIN-CONTAINING PROTEIN
AT5G64650

Predicted

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FSW = 0.3267

Unknown

 RIBOSOMAL PROTEIN L17 FAMILY PROTEIN

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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