Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G75990 - ( 26S proteasome regulatory subunit S3 putative (RPN3) )

52 Proteins interacs with AT1G75990
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G25490

Experimental

biochemical

FSW = 0.2766

Class D:

nucleus (p = 0.78)

EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G45010

Experimental

two hybrid

protein complementation assay

FSW = 0.0416

Unknown

ATDSS1(V) (ARABIDOPSIS DSS1 HOMOLOG ON CHROMOSOME V)
AT1G64750

Experimental

two hybrid

protein complementation assay

FSW = 0.2359

Unknown

ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))
AT3G04120

Predicted

Affinity Capture-MS

FSW = 0.0367

Class C:

plasma membrane

GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT3G60820

Predicted

Affinity Capture-MS

FSW = 0.1024

Class C:

plasma membrane

PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G56030

Predicted

synthetic growth defect

interologs mapping

FSW = 0.0587

Class C:

plasma membrane

HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING
AT3G48750

Predicted

Affinity Capture-Western

Co-purification

synthetic growth defect

FSW = 0.0323

Class C:

plasma membrane

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0226

Class C:

plasma membrane

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G20200

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.7018

Class C:

plasma membrane

EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR
AT1G53750

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3585

Class C:

plasma membrane

RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE
AT5G19990

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2498

Class C:

plasma membrane

RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT2G20580

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.3418

Class C:

plasma membrane

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT5G42790

Predicted

Affinity Capture-MS

FSW = 0.3762

Class C:

plasma membrane

PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G24820

Predicted

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Affinity Capture-MS

two hybrid

two hybrid

Affinity Capture-MS

FSW = 0.4445

Class C:

plasma membrane

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7)
AT3G51260

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2571

Unknown

PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G27020

Predicted

Affinity Capture-MS

FSW = 0.1797

Unknown

PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G14800

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.3143

Unknown

PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G31300

Predicted

Affinity Capture-MS

FSW = 0.2545

Unknown

PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G37690

Predicted

Affinity Capture-MS

FSW = 0.0247

Unknown

PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE PUTATIVE / AIR CARBOXYLASE PUTATIVE
AT2G17265

Predicted

Affinity Capture-MS

FSW = 0.0591

Unknown

HSK (HOMOSERINE KINASE) HOMOSERINE KINASE
AT3G05530

Predicted

Affinity Capture-MS

FSW = 0.4452

Unknown

RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING
AT1G63780

Predicted

Affinity Capture-MS

FSW = 0.0442

Unknown

IMP4
AT4G25630

Predicted

Affinity Capture-MS

FSW = 0.0132

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G67490

Predicted

Affinity Capture-MS

FSW = 0.0189

Unknown

GCS1 (GLUCOSIDASE 1) ALPHA-GLUCOSIDASE
AT3G05710

Predicted

Affinity Capture-MS

FSW = 0.0137

Unknown

SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT2G03120

Predicted

Affinity Capture-MS

FSW = 0.0239

Unknown

ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE
AT5G58290

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.3983

Unknown

RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE
AT1G77140

Predicted

Affinity Capture-MS

FSW = 0.0893

Unknown

VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER
AT5G38470

Predicted

Affinity Capture-MS

FSW = 0.1659

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT5G49550

Predicted

two hybrid

FSW = 0.0193

Unknown

UNKNOWN PROTEIN
AT4G19006

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4500

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT5G07590

Predicted

Affinity Capture-MS

FSW = 0.0207

Unknown

WD-40 REPEAT PROTEIN FAMILY
AT5G45620

Predicted

Affinity Capture-MS

FSW = 0.0951

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT5G59410

Predicted

Affinity Capture-MS

FSW = 0.0145

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RAB5-INTERACTING (INTERPROIPR010742) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RAB5-INTERACTING FAMILY PROTEIN (TAIRAT2G290201) HAS 154 BLAST HITS TO 154 PROTEINS IN 67 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 108 FUNGI - 0 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT1G51710

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2549

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G64520

Predicted

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

two hybrid

Affinity Capture-MS

two hybrid

Affinity Capture-MS

interologs mapping

Synthetic Lethality

FSW = 0.4302

Unknown

RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE
AT1G29150

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-MS

Co-purification

FSW = 0.3308

Unknown

ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT1G60620

Predicted

Affinity Capture-MS

FSW = 0.0117

Unknown

ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G80410

Predicted

Affinity Capture-MS

FSW = 0.0752

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G03430

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4163

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT2G27970

Predicted

Reconstituted Complex

synthetic growth defect

FSW = 0.0180

Unknown

CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G32730

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5065

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT3G11270

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4238

Unknown

MEE34 (MATERNAL EFFECT EMBRYO ARREST 34)
AT3G13970

Predicted

Affinity Capture-MS

FSW = 0.1502

Unknown

APG12B (AUTOPHAGY 12 B)
AT4G29040

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4400

Unknown

RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE
AT4G38630

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2340

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G09900

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4518

Unknown

EMB2107 (EMBRYO DEFECTIVE 2107)
AT5G23540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4400

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT4G27040

Predicted

Affinity Capture-MS

FSW = 0.0660

Unknown

VPS22
AT4G33240

Predicted

Affinity Capture-MS

FSW = 0.0292

Unknown

1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT5G16870

Predicted

Affinity Capture-MS

FSW = 0.0488

Unknown

AMINOACYL-TRNA HYDROLASE
AT5G43010

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4391

Unknown

RPT4A ATPASE

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454