Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G21440 - ( RNA recognition motif (RRM)-containing protein )
62 Proteins interacs with AT2G21440Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G25520 | PredictedAffinity Capture-MS | FSW = 0.2388
| Unknown | ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G09630 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1611
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT2G47610 | PredictedAffinity Capture-MS | FSW = 0.2140
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
AT1G43170 | PredictedAffinity Capture-MS | FSW = 0.1979
| Unknown | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G27850 | PredictedAffinity Capture-MS | FSW = 0.1368
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18C) |
AT3G07110 | PredictedAffinity Capture-MS | FSW = 0.1163
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AA) |
AT1G18540 | PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT3G03920 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1097
| Unknown | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
AT3G13580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3058
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT1G06380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4132
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT3G06530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1442
| Unknown | BINDING |
AT1G67120 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1191
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING |
AT3G01610 | PredictedAffinity Capture-MS | FSW = 0.3515
| Unknown | CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G39740 | PredictedAffinity Capture-MS | FSW = 0.3072
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT3G11964 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3751
| Unknown | RNA BINDING |
AT2G39460 | PredictedAffinity Capture-MS | FSW = 0.1364
| Unknown | RPL23AA (RIBOSOMAL PROTEIN L23AA) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G12920 | Predictedtwo hybridinteraction prediction | FSW = 0.0474
| Unknown | ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2) TRANSLATION RELEASE FACTOR |
AT2G40360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4292
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G04600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4489
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.1062
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT4G25630 | PredictedSynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.2238
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT1G10300 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3678
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT4G26600 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2285
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G58660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4519
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT1G72440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5435
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT3G57150 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2090
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT3G16810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5884
| Unknown | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
AT5G55920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4281
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G07050 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3798
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT3G12860 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1854
| Unknown | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
AT1G56110 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0634
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
AT3G18600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2348
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G15550 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4587
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G30990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0241
| Unknown | BINDING |
AT1G10490 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1736
| Unknown | UNKNOWN PROTEIN |
AT2G31300 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0165
| Unknown | ARPC1B (ACTIN-RELATED PROTEIN C1B) ACTIN BINDING / NUCLEOTIDE BINDING |
AT2G30910 | PredictedAffinity Capture-MS | FSW = 0.0182
| Unknown | ARPC1A (ACTIN-RELATED PROTEIN C1A) ACTIN BINDING / NUCLEOTIDE BINDING |
AT1G50920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4292
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT1G61580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3080
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G18220 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5279
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
AT1G60780 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0767
| Unknown | HAP13 (HAPLESS 13) PROTEIN BINDING |
AT1G72320 | PredictedAffinity Capture-MS | FSW = 0.1722
| Unknown | APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING |
AT2G34357 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3267
| Unknown | BINDING |
AT3G15460 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.4049
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G16840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3266
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G55280 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2410
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G01560 | PredictedAffinity Capture-MS | FSW = 0.5133
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
AT4G16630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5176
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
AT4G30991 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1164
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
AT4G34910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2500
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
AT5G14520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSinteraction prediction | FSW = 0.4114
| Unknown | PESCADILLO-RELATED |
AT5G20600 | PredictedAffinity Capture-MS | FSW = 0.3195
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
AT5G46840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4353
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G61770 | Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MS | FSW = 0.3551
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
AT5G65900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4637
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G24830 | PredictedAffinity Capture-MS | FSW = 0.2085
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
AT4G15770 | PredictedAffinity Capture-MS | FSW = 0.4088
| Unknown | RNA BINDING / PROTEIN BINDING |
AT2G23080 | PredictedAffinity Capture-MS | FSW = 0.1403
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT1G10730 | PredictedAffinity Capture-MS | FSW = 0.0901
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
AT1G52930 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4279
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT5G18230 | Predictedinteraction predictiontwo hybrid | FSW = 0.0065
| Unknown | TRANSCRIPTION REGULATOR NOT2/NOT3/NOT5 FAMILY PROTEIN |
AT5G67380 | Predictedinteraction prediction | FSW = 0.1121
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454