Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G05910 - ( cell division cycle protein 48-related / CDC48-related )

66 Proteins interacs with AT1G05910
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G08710

Predicted

Affinity Capture-MS

FSW = 0.0790

Unknown

ATH9 (THIOREDOXIN H-TYPE 9)
AT1G07930Predicted

Affinity Capture-MS

FSW = 0.0744

Unknown

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G20960

Predicted

two hybrid

FSW = 0.0235

Unknown

EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G02520

Predicted

Phenotypic Enhancement

FSW = 0.0978

Unknown

GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G59690Predicted

Phenotypic Suppression

FSW = 0.0881

Unknown

HISTONE H4
AT2G31170

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0458

Unknown

SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT3G11630

Predicted

Affinity Capture-MS

FSW = 0.0852

Unknown

2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT2G45300

Predicted

Phenotypic Suppression

FSW = 0.0364

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT3G48750

Predicted

biochemical

interaction prediction

FSW = 0.0086

Unknown

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT3G47370

Predicted

Affinity Capture-MS

FSW = 0.0577

Unknown

40S RIBOSOMAL PROTEIN S20 (RPS20B)
AT3G61430

Predicted

Affinity Capture-Western

FSW = 0.0752

Unknown

PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL
AT1G11890

Predicted

Phenotypic Enhancement

FSW = 0.0742

Unknown

SEC22 TRANSPORTER
AT4G24400

Predicted

Affinity Capture-MS

FSW = 0.1354

Unknown

CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT2G44680

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.1644

Unknown

CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT5G67270

Predicted

Synthetic Lethality

Synthetic Lethality

interaction prediction

FSW = 0.1742

Unknown

ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT2G24490

Predicted

Phenotypic Enhancement

FSW = 0.0694

Unknown

RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT3G12810

Predicted

Phenotypic Enhancement

FSW = 0.1543

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G02680

Predicted

Phenotypic Enhancement

Affinity Capture-MS

FSW = 0.0712

Unknown

TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT2G43810

Predicted

Phenotypic Enhancement

FSW = 0.1063

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G19120

Predicted

Phenotypic Enhancement

FSW = 0.1023

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT4G10710

Predicted

Affinity Capture-MS

FSW = 0.0868

Unknown

SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT4G10670

Predicted

Affinity Capture-MS

FSW = 0.0799

Unknown

GTC2
AT1G02740

Predicted

synthetic growth defect

FSW = 0.2980

Unknown

CHROMATIN BINDING
AT2G47620

Predicted

Phenotypic Enhancement

FSW = 0.1207

Unknown

ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT2G27470

Predicted

Phenotypic Suppression

FSW = 0.1108

Unknown

NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR
AT2G13370

Predicted

Phenotypic Enhancement

FSW = 0.2067

Unknown

CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G36740

Predicted

Phenotypic Enhancement

FSW = 0.2154

Unknown

SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT5G08630

Predicted

Phenotypic Suppression

FSW = 0.1477

Unknown

DDT DOMAIN-CONTAINING PROTEIN
AT4G30990

Predicted

Affinity Capture-MS

FSW = 0.0885

Unknown

BINDING
AT3G47690

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1363

Unknown

ATEB1A MICROTUBULE BINDING
AT3G23890

Predicted

Affinity Capture-MS

FSW = 0.0599

Unknown

TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE
AT4G10920

Predicted

Affinity Capture-MS

FSW = 0.0553

Unknown

KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR
AT3G28730

Predicted

Phenotypic Enhancement

FSW = 0.0640

Unknown

ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT4G21710

Predicted

Affinity Capture-MS

FSW = 0.0106

Unknown

NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G12530

Predicted

Affinity Capture-MS

FSW = 0.1127

Unknown

PSF2
AT3G12280

Predicted

Phenotypic Enhancement

FSW = 0.0031

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT1G08780

Predicted

Synthetic Lethality

Phenotypic Enhancement

interaction prediction

FSW = 0.1010

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G14310

Predicted

Affinity Capture-MS

FSW = 0.1093

Unknown

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT1G20920

Predicted

Affinity Capture-MS

FSW = 0.1630

Unknown

DEAD BOX RNA HELICASE PUTATIVE
AT1G29990

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.1222

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G52740

Predicted

Phenotypic Enhancement

FSW = 0.1598

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G54140

Predicted

Phenotypic Enhancement

FSW = 0.1019

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G55730

Predicted

Affinity Capture-MS

FSW = 0.1916

Unknown

ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER
AT1G63160

Predicted

Phenotypic Enhancement

FSW = 0.0551

Unknown

REPLICATION FACTOR C 40 KDA PUTATIVE
AT1G63370

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0723

Unknown

FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT2G21250

Predicted

Affinity Capture-MS

FSW = 0.1011

Unknown

MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE
AT2G47760

Predicted

Affinity Capture-MS

FSW = 0.0684

Unknown

ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC
AT3G12200

Predicted

Affinity Capture-MS

FSW = 0.0408

Unknown

ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G18660

Predicted

Affinity Capture-MS

FSW = 0.0113

Unknown

PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G21460

Predicted

Affinity Capture-MS

FSW = 0.0294

Unknown

ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE
AT3G22480

Predicted

Synthetic Lethality

Phenotypic Enhancement

interaction prediction

FSW = 0.1295

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G22590

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

interaction prediction

FSW = 0.0994

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G52390

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1235

Unknown

TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT4G39330

Predicted

Affinity Capture-MS

FSW = 0.1059

Unknown

CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT5G09740

Predicted

synthetic growth defect

FSW = 0.1142

Unknown

HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G23290

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.1194

Unknown

PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G26680

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1251

Unknown

ENDONUCLEASE PUTATIVE
AT5G45600

Predicted

Phenotypic Enhancement

FSW = 0.2164

Unknown

GAS41 PROTEIN BINDING
AT5G46150

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0608

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT5G48640

Predicted

Phenotypic Enhancement

FSW = 0.1504

Unknown

CYCLIN FAMILY PROTEIN
AT5G54200

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0946

Unknown

WD-40 REPEAT FAMILY PROTEIN
AT5G63610

Predicted

Phenotypic Enhancement

FSW = 0.1234

Unknown

CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G10070

Predicted

Phenotypic Enhancement

FSW = 0.0949

Unknown

TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT5G27740

Predicted

Phenotypic Enhancement

FSW = 0.0395

Unknown

EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G49510

Predicted

Phenotypic Enhancement

FSW = 0.0817

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT3G09670

Predicted

Affinity Capture-MS

FSW = 0.0245

Unknown

PWWP DOMAIN-CONTAINING PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454