Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G01020 - ( ARV1 )
73 Proteins interacs with AT1G01020Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G23630 | PredictedPhenotypic Enhancement | FSW = 0.0887
| Class C:endoplasmic reticulum | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G11680 | PredictedSynthetic Lethalitytwo hybrid | FSW = 0.0212
| Class C:endoplasmic reticulum | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT1G11890 | PredictedPhenotypic Enhancement | FSW = 0.0532
| Class C:endoplasmic reticulum | SEC22 TRANSPORTER |
AT2G17520 | PredictedPhenotypic Enhancement | FSW = 0.0569
| Class C:endoplasmic reticulum | IRE1A ENDORIBONUCLEASE/ KINASE |
AT3G05710 | PredictedPhenotypic Enhancement | FSW = 0.0744
| Class C:endoplasmic reticulum | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT5G19130 | PredictedPhenotypic Suppression | FSW = 0.0135
| Class C:endoplasmic reticulum | GPI TRANSAMIDASE COMPONENT FAMILY PROTEIN / GAA1-LIKE FAMILY PROTEIN |
AT3G47520 | PredictedCo-purification | FSW = 0.0801
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G09590 | PredictedSynthetic Lethality | FSW = 0.0470
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT1G33140 | PredictedReconstituted ComplexReconstituted Complex | FSW = 0.0753
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G36750 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.1116
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT2G37270 | PredictedCo-purificationAffinity Capture-WesternCo-purification | FSW = 0.0820
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G31780 | PredictedPhenotypic Enhancement | FSW = 0.1109
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT2G30710 | PredictedPhenotypic Enhancement | FSW = 0.1218
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT5G13710 | PredictedPhenotypic Enhancement | FSW = 0.0376
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT5G01820 | PredictedCo-purification | FSW = 0.0408
| Unknown | ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G23600 | PredictedAffinity Capture-Western | FSW = 0.0073
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT1G75170 | PredictedAffinity Capture-Western | FSW = 0.0375
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0296
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G03540 | PredictedAffinity Capture-WesternReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerntwo hybridAffinity Capture-WesternAffinity Capture-Westerntwo hybridAffinity Capture-MSCo-crystal Structureinterologs mapping | FSW = 0.2247
| Unknown | ATEXO70A1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A1) PROTEIN BINDING |
AT2G39480 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternReconstituted ComplexCo-purification | FSW = 0.1478
| Unknown | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G02490 | PredictedCo-purification | FSW = 0.0240
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT2G34450 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.1805
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT3G13445 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-WesternCo-purificationSynthetic LethalitySynthetic Rescue | FSW = 0.0895
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT3G18600 | Predictedco-fractionationCo-fractionation | FSW = 0.0770
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G21540 | PredictedAffinity Capture-WesternReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-WesternCo-purificationSynthetic Rescue | FSW = 0.1331
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G44900 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0432
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / F-BOX FAMILY PROTEIN |
AT5G18280 | PredictedPhenotypic Enhancement | FSW = 0.1324
| Unknown | ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) ATPASE/ NUCLEOTIDE DIPHOSPHATASE |
AT5G44790 | PredictedPhenotypic Suppression | FSW = 0.0234
| Unknown | RAN1 (RESPONSIVE-TO-ANTAGONIST 1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / COPPER ION TRANSMEMBRANE TRANSPORTER |
AT2G13650 | PredictedPhenotypic Enhancement | FSW = 0.0554
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT5G63960 | PredictedCo-purification | FSW = 0.0753
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G16420 | PredictedSynthetic Lethality | FSW = 0.0159
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT2G19450 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.0272
| Unknown | TAG1 (TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1) DIACYLGLYCEROL O-ACYLTRANSFERASE |
AT1G01910 | PredictedPhenotypic Enhancement | FSW = 0.0768
| Unknown | ANION-TRANSPORTING ATPASE PUTATIVE |
AT1G26450 | PredictedPhenotypic Enhancement | FSW = 0.0959
| Unknown | BETA-13-GLUCANASE-RELATED |
AT2G01070 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.1443
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G724801) HAS 500 BLAST HITS TO 499 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 271 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 33 (SOURCE NCBI BLINK) |
AT2G22530 | PredictedPhenotypic EnhancementPhenotypic Suppression | FSW = 0.1750
| Unknown | CATALYTIC/ TRANSFERASE |
AT3G01090 | Predictedbiochemical | FSW = 0.0069
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G12180 | PredictedPhenotypic Enhancement | FSW = 0.1653
| Unknown | CORNICHON FAMILY PROTEIN |
AT3G25585 | Predictedinterologs mapping | FSW = 0.0084
| Unknown | AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS |
AT3G44190 | Predictedinterologs mappingReconstituted Complex | FSW = 0.0968
| Unknown | PYRIDINE NUCLEOTIDE-DISULPHIDE OXIDOREDUCTASE FAMILY PROTEIN |
AT3G45630 | PredictedReconstituted Complex | FSW = 0.0336
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G58490 | PredictedPhenotypic Enhancement | FSW = 0.0621
| Unknown | PHOSPHATIDIC ACID PHOSPHATASE FAMILY PROTEIN / PAP2 FAMILY PROTEIN |
AT4G02120 | PredictedAffinity Capture-WesternReconstituted ComplexSynthetic Lethality | FSW = 0.1587
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT4G17910 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.0750
| Unknown | TRANSFERASE TRANSFERRING ACYL GROUPS |
AT4G26510 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternCo-purification | FSW = 0.0925
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
AT5G04420 | PredictedSynthetic Lethalityinterologs mapping | FSW = 0.0733
| Unknown | KELCH REPEAT-CONTAINING PROTEIN |
AT5G11570 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybrid | FSW = 0.1837
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G43340 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mappingReconstituted ComplexReconstituted Complexinterologs mapping | FSW = 0.1253
| Unknown | PHT6 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G43710 | PredictedPhenotypic Suppression | FSW = 0.0203
| Unknown | GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN |
AT5G46280 | Predictedinterologs mapping | FSW = 0.0651
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT1G02630 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.2233
| Unknown | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER PUTATIVE (ENT8) |
AT1G06080 | PredictedPhenotypic Suppression | FSW = 0.0249
| Unknown | ADS1 (DELTA 9 DESATURASE 1) OXIDOREDUCTASE |
AT1G07340 | PredictedCo-purification | FSW = 0.0340
| Unknown | ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G08260 | PredictedAffinity Capture-Western | FSW = 0.1237
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT1G12130 | PredictedAffinity Capture-Western | FSW = 0.1074
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G34340 | PredictedAffinity Capture-Western | FSW = 0.0859
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT1G55810 | PredictedCo-purification | FSW = 0.0611
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT1G57600 | PredictedPhenotypic Enhancement | FSW = 0.0905
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT1G79990 | PredictedPhenotypic Enhancement | FSW = 0.0698
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT2G19160 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0550
| Unknown | UNKNOWN PROTEIN |
AT2G30650 | PredictedCo-purification | FSW = 0.0780
| Unknown | CATALYTIC |
AT2G34770 | PredictedPhenotypic Suppression | FSW = 0.1355
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT2G34980 | Predictedinterologs mapping | FSW = 0.0376
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT2G40110 | PredictedCo-purification | FSW = 0.0111
| Unknown | YIPPEE FAMILY PROTEIN |
AT2G46280 | PredictedCo-purification | FSW = 0.0971
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G17520 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.1190
| Unknown | LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN |
AT3G29060 | PredictedCo-purification | FSW = 0.0844
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 6 PLANT STRUCTURES EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE 4 ANTHESIS PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G140401) HAS 970 BLAST HITS TO 889 PROTEINS IN 159 SPECIES ARCHAE - 2 BACTERIA - 5 METAZOA - 379 FUNGI - 260 PLANTS - 176 VIRUSES - 28 OTHER EUKARYOTES - 120 (SOURCE NCBI BLINK) |
AT3G45100 | Predictedinterologs mapping | FSW = 0.0454
| Unknown | SETH2 TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G57170 | Predictedinterologs mapping | FSW = 0.0449
| Unknown | N-ACETYLGLUCOSAMINYL TRANSFERASE COMPONENT FAMILY PROTEIN / GPI1 FAMILY PROTEIN |
AT4G16710 | PredictedAffinity Capture-Western | FSW = 0.1115
| Unknown | GLYCOSYLTRANSFERASE FAMILY PROTEIN 28 |
AT4G24040 | PredictedCo-purification | FSW = 0.1437
| Unknown | TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE |
AT5G10480 | PredictedPhenotypic Enhancement | FSW = 0.0292
| Unknown | PAS2 (PASTICCINO 2) ENOYL-COA HYDRATASE/ PROTEIN TYROSINE PHOSPHATASE |
AT5G27490 | PredictedPhenotypic Enhancement | FSW = 0.0489
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454