Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G20580 - ( small nuclear ribonucleoprotein putative / snRNP putative / Sm protein putative )
55 Proteins interacs with AT1G20580| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G07590
   | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5054
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
| AT4G02840
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5896
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
| AT1G20960
| PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5650
| Class C:nucleus | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT1G09760
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.6084
| Class C:nucleus | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
| AT1G09770
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3880
| Class C:nucleus | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G19940
| PredictedAffinity Capture-MS | FSW = 0.0161
| Class C:nucleus | N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE/ NAD OR NADH BINDING / BINDING / CATALYTIC/ OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS NAD OR NADP AS ACCEPTOR / PROTEIN DIMERIZATION |
| AT5G64270
| PredictedAffinity Capture-MS | FSW = 0.4219
| Class C:nucleus | SPLICING FACTOR PUTATIVE |
| AT5G08290
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.6184
| Class C:nucleus | YLS8 CATALYTIC |
| AT2G47640
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5000
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
| AT3G19840
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2962
| Class C:nucleus | FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN |
| AT3G50670
| PredictedAffinity Capture-MS | FSW = 0.1527
| Class C:nucleus | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT2G23930
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.6731
| Class C:nucleus | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
| AT5G27720
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2736
| Class C:nucleus | EMB1644 (EMBRYO DEFECTIVE 1644) |
| AT3G11500
| Predictedinteraction predictionCo-expression | FSW = 0.5823
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE |
| AT1G28060
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4757
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
| AT5G44200
| PredictedSynthetic LethalityCo-expression | FSW = 0.0923
| Class C:nucleus | CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING |
| AT2G41500
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4655
| Class C:nucleus | EMB2776 NUCLEOTIDE BINDING |
| AT1G05120
| Predictedtwo hybridinterologs mappinginteraction prediction | FSW = 0.0057
| Class C:nucleus | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
| AT3G62310
| PredictedAffinity Capture-MS | FSW = 0.0957
| Class C:nucleus | RNA HELICASE PUTATIVE |
| AT1G04510
| PredictedAffinity Capture-MSCo-purificationCo-expression | FSW = 0.4461
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G43810
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1653
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
| AT1G03330
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.3348
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
| AT4G30330
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5185
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
| AT2G18740
| PredictedAffinity Capture-MSCo-expression | FSW = 0.5065
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
| AT1G19120
| PredictedAffinity Capture-MS | FSW = 0.1175
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT4G30220
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.6198
| Class C:nucleus | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
| AT2G03870
| PredictedAffinity Capture-MS | FSW = 0.1866
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT5G48870
| Predictedinteraction predictionCo-expression | FSW = 0.2364
| Class C:nucleus | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING |
| AT5G20160
| Predictedinteraction predictionCo-expression | FSW = 0.0120
| Class C:nucleus | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
| AT1G80070
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5779
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
| AT2G33340
| PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.4141
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G55200 | PredictedAffinity Capture-MS | FSW = 0.3826
| Unknown | SPLICING FACTOR PUTATIVE |
| AT1G11680
| PredictedSynthetic Lethality | FSW = 0.0074
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
| AT1G54080
| Predictedinteraction prediction | FSW = 0.0174
| Unknown | OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE |
| AT2G43460
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0075
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38A) |
| AT4G15900
| PredictedAffinity Capture-MS | FSW = 0.2045
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT1G16800
| Predictedinteraction predictiontwo hybridinterologs mapping | FSW = 0.0125
| Unknown | TRNA-SPLICING ENDONUCLEASE POSITIVE EFFECTOR-RELATED |
| AT1G14640
| PredictedAffinity Capture-MS | FSW = 0.5258
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
| AT1G17070
| PredictedAffinity Capture-MS | FSW = 0.3818
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
| AT1G17130
| PredictedAffinity Capture-MS | FSW = 0.1245
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
| AT1G60170
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.6045
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
| AT2G32600
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3307
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
| AT3G03340
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3597
| Unknown | UNE6 (UNFERTILIZED EMBRYO SAC 6) |
| AT3G05760
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2575
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT3G14100
| PredictedAffinity Capture-MS | FSW = 0.0156
| Unknown | OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE |
| AT4G03430
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3902
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
| AT4G21660
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5043
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
| AT5G06160
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5128
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT5G28740
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2902
| Unknown | TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED |
| AT5G41770
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3664
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
| AT5G46400
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4896
| Unknown | PRP39-2 |
| AT3G55220
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.6119
| Unknown | SPLICING FACTOR PUTATIVE |
| AT1G44910
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1882
| Unknown | PROTEIN BINDING |
| AT1G17370
| PredictedAffinity Capture-MS | FSW = 0.0106
| Unknown | UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B) MRNA 3-UTR BINDING |
| AT1G11650
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1416
| Unknown | RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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