Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G37790 - ( aldo/keto reductase family protein )
87 Proteins interacs with AT2G37790Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedPhenotypic Enhancement | FSW = 0.0317
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT1G07890 | PredictedSynthetic Lethality | FSW = 0.0243
| Class C:plasma membrane | APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE |
AT5G60540 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.2564
| Class C:plasma membrane | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT3G05560 | Predictedtwo hybridCo-expression | FSW = 0.0040
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L22-2 (RPL22B) |
AT2G32670 | Predictedsynthetic growth defect | FSW = 0.2662
| Class C:plasma membrane | ATVAMP725 |
AT4G33090 | PredictedSynthetic Lethality | FSW = 0.0840
| Class C:plasma membrane | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT4G15000 | PredictedPhenotypic Enhancement | FSW = 0.0315
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT1G80050 | PredictedPhenotypic Suppression | FSW = 0.2179
| Class C:plasma membrane | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT5G66210 | PredictedAffinity Capture-MS | FSW = 0.0248
| Class C:plasma membrane | CPK28 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G16850 | PredictedPhenotypic Enhancement | FSW = 0.0224
| Class C:plasma membrane | PIP28 (PLASMA MEMBRANE INTRINSIC PROTEIN 28) WATER CHANNEL |
AT5G09590 | PredictedPhenotypic Enhancement | FSW = 0.1458
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT4G16660 | PredictedPhenotypic Enhancement | FSW = 0.2253
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT1G20260 | PredictedPhenotypic Enhancement | FSW = 0.0867
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0616
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G22110 | PredictedAffinity Capture-MS | FSW = 0.1054
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G37870 | PredictedAffinity Capture-MS | FSW = 0.0071
| Unknown | PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1) ATP BINDING / PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP)/ PHOSPHOENOLPYRUVATE CARBOXYKINASE/ PURINE NUCLEOTIDE BINDING |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.1286
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT5G65430 | PredictedPhenotypic Enhancement | FSW = 0.0765
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G54670 | PredictedPhenotypic Enhancement | FSW = 0.0864
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT1G76300 | PredictedPhenotypic Enhancement | FSW = 0.1153
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT3G13445 | PredictedPhenotypic Enhancement | FSW = 0.1052
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT3G52250 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1323
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT1G09060 | PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN |
AT4G18880 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | AT-HSFA4A DNA BINDING / TRANSCRIPTION FACTOR |
AT4G25340 | Predictedsynthetic growth defect | FSW = 0.1957
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT4G28060 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0111
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 6B PUTATIVE |
AT2G30160 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2650
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT3G18480 | PredictedSynthetic Lethality | FSW = 0.1436
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT2G14580 | PredictedSynthetic Lethality | FSW = 0.0093
| Unknown | ATPRB1 |
AT5G02730 | PredictedPhenotypic Suppression | FSW = 0.0761
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G30320 | Predictedtwo hybrid | FSW = 0.0605
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G54840 | PredictedPhenotypic Enhancement | FSW = 0.1459
| Unknown | ARA6 GTP BINDING / GTPASE |
AT3G07140 | PredictedPhenotypic Enhancement | FSW = 0.1421
| Unknown | GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN |
AT5G47720 | PredictedPhenotypic Enhancement | FSW = 0.0544
| Unknown | ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE |
AT2G29540 | PredictedSynthetic Lethality | FSW = 0.1135
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G17810 | PredictedSynthetic Lethality | FSW = 0.0451
| Unknown | BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
AT3G60360 | Predictedsynthetic growth defect | FSW = 0.3167
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT4G39200 | PredictedPhenotypic Enhancementsynthetic growth defectSynthetic Lethality | FSW = 0.2590
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT1G62800 | PredictedPhenotypic Enhancement | FSW = 0.1106
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT4G16420 | Predictedsynthetic growth defect | FSW = 0.1652
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT4G08320 | Predictedtwo hybridtwo hybrid | FSW = 0.0078
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT3G01320 | Predictedtwo hybrid | FSW = 0.0077
| Unknown | SNL1 (SIN3-LIKE 1) |
AT3G61620 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0110
| Unknown | RRP41 3-5-EXORIBONUCLEASE/ RNA BINDING |
AT1G13580 | PredictedSynthetic Lethality | FSW = 0.1811
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G27320 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1122
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0770
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT2G37420 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2766
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT1G05830 | Predictedtwo hybrid | FSW = 0.0126
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT1G07820 | PredictedPhenotypic Enhancement | FSW = 0.0239
| Unknown | HISTONE H4 |
AT1G11510 | Predictedsynthetic growth defect | FSW = 0.1004
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT1G26320 | PredictedPhenotypic Enhancement | FSW = 0.1144
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G72320 | PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING |
AT1G76920 | PredictedPhenotypic Enhancement | FSW = 0.0606
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G24960 | PredictedPhenotypic Enhancement | FSW = 0.1887
| Unknown | UNKNOWN PROTEIN |
AT3G02000 | PredictedPhenotypic Enhancement | FSW = 0.1586
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
AT3G09640 | PredictedPhenotypic Enhancement | FSW = 0.1722
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT3G11230 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Suppressiontwo hybrid | FSW = 0.4721
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G18660 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic EnhancementSynthetic Lethality | FSW = 0.0926
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G21460 | Predictedsynthetic growth defect | FSW = 0.1025
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT3G47610 | Predictedsynthetic growth defect | FSW = 0.0485
| Unknown | TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT3G48960 | PredictedPhenotypic Enhancement | FSW = 0.0051
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13C) |
AT4G04695 | PredictedPhenotypic Enhancement | FSW = 0.1715
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G13020 | PredictedPhenotypic Enhancement | FSW = 0.1567
| Unknown | MHK ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G21490 | PredictedSynthetic Lethality | FSW = 0.1156
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G25950 | Predictedbiochemical | FSW = 0.0530
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G27130 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.2094
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G04800 | PredictedPhenotypic Enhancement | FSW = 0.1123
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G14060 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.2375
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT5G14180 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.1485
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G38030 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.0547
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT5G64760 | PredictedPhenotypic Enhancement | FSW = 0.2180
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT2G38600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1226
| Unknown | ACID PHOSPHATASE CLASS B FAMILY PROTEIN |
AT5G44830 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.2260
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT5G67540 | PredictedSynthetic Lethality | FSW = 0.1262
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT4G19190 | Predictedtwo hybrid | FSW = 0.0291
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT1G24190 | Predictedtwo hybrid | FSW = 0.0071
| Unknown | SNL3 (SIN3-LIKE 3) TRANSCRIPTION REPRESSOR |
AT4G03430 | Predictedinteraction prediction | FSW = 0.0188
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT2G37770 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1800
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G59950 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2321
| Unknown | ALDO/KETO REDUCTASE PUTATIVE |
AT5G62420 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1811
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G53880 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0524
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G59960 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1512
| Unknown | ALDO/KETO REDUCTASE PUTATIVE |
AT5G01670 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1387
| Unknown | ALDOSE REDUCTASE PUTATIVE |
AT2G37760 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0900
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G21250 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.0641
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G21260 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1633
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454