Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G27320 - ( AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) cytokinin receptor/ osmosensor/ protein histidine kinase )

90 Proteins interacs with AT1G27320
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G39340

Experimental

pull down

FSW = 0.0667

Unknown

AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3) HISTIDINE PHOSPHOTRANSFER KINASE
AT5G62920

Experimental

FSW = 0.0233

Unknown

ARR6 (RESPONSE REGULATOR 6) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR
AT1G19050

Experimental

FSW = 0.0619

Unknown

ARR7 (RESPONSE REGULATOR 7) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR
AT3G29350

Experimental

pull down

FSW = 0.0718

Unknown

AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2) HISTIDINE PHOSPHOTRANSFER KINASE/ PROTEIN BINDING / SIGNAL TRANSDUCER
AT3G48100

Experimental

FSW = 0.0359

Unknown

ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR
AT5G43560

Experimental

two hybrid

FSW = 0.0287

Unknown

MEPRIN AND TRAF HOMOLOGY DOMAIN-CONTAINING PROTEIN / MATH DOMAIN-CONTAINING PROTEIN
AT5G35750

Experimental

synthetic growth defect

pull down

synthetic growth defect

Phenotypic Enhancement

FSW = 0.0351

Unknown

AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT2G01830

Experimental

pull down

synthetic growth defect

FSW = 0.0445

Unknown

WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE
AT3G21510

Experimental

pull down

FSW = 0.0690

Unknown

AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1) HISTIDINE PHOSPHOTRANSFER KINASE
AT4G16660

Predicted

Phenotypic Suppression

FSW = 0.1183

Unknown

HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE
AT2G36530

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2303

Unknown

LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE
AT1G76040

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.3094

Unknown

CPK29 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G09440

Predicted

Affinity Capture-MS

FSW = 0.0408

Unknown

HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3)
AT2G34480

Predicted

Affinity Capture-MS

FSW = 0.0894

Unknown

60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT1G31780

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1506

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT1G04040

Predicted

Affinity Capture-MS

FSW = 0.0430

Unknown

ACID PHOSPHATASE CLASS B FAMILY PROTEIN
AT1G74560

Predicted

Phenotypic Enhancement

FSW = 0.1340

Unknown

NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING
AT5G53890

Predicted

Gene fusion method

FSW = 0.0344

Unknown

LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE
AT1G74710

Predicted

Affinity Capture-MS

FSW = 0.1516

Unknown

ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT2G44350

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Co-purification

FSW = 0.3051

Unknown

ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE
AT1G77750

Predicted

Phenotypic Suppression

FSW = 0.0108

Unknown

30S RIBOSOMAL PROTEIN S13 CHLOROPLAST PUTATIVE
AT1G32470

Predicted

Phenotypic Suppression

FSW = 0.0147

Unknown

GLYCINE CLEAVAGE SYSTEM H PROTEIN MITOCHONDRIAL PUTATIVE
AT5G15450

Predicted

Phenotypic Enhancement

FSW = 0.0649

Unknown

CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G23940

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-MS

Co-purification

FSW = 0.3089

Unknown

DEHYDRATASE FAMILY
AT4G25910

Predicted

Affinity Capture-MS

FSW = 0.0808

Unknown

NFU3 STRUCTURAL MOLECULE
AT1G48860

Predicted

Phenotypic Enhancement

FSW = 0.0915

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
AT1G73230

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1921

Unknown

NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN
AT2G32670

Predicted

Phenotypic Suppression

FSW = 0.0615

Unknown

ATVAMP725
AT1G62020

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0089

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE
AT4G21680

Predicted

Phenotypic Suppression

FSW = 0.0718

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT2G25070

Predicted

interologs mapping

interologs mapping

FSW = 0.0128

Unknown

PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT4G33090

Predicted

Phenotypic Enhancement

FSW = 0.1076

Unknown

APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT1G80050

Predicted

Phenotypic Suppression

FSW = 0.1596

Unknown

APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT2G37790

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1122

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT4G34430

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1506

Unknown

CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT3G50670

Predicted

Affinity Capture-MS

FSW = 0.0110

Unknown

U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G52250

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2664

Unknown

DNA BINDING / TRANSCRIPTION FACTOR
AT2G40290

Predicted

Affinity Capture-MS

FSW = 0.1373

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT2G26150

Predicted

biochemical

biochemical

biochemical

Synthetic Lethality

Synthetic Rescue

FSW = 0.0204

Unknown

ATHSFA2 DNA BINDING / TRANSCRIPTION FACTOR
AT1G64880

Predicted

Phenotypic Enhancement

FSW = 0.0479

Unknown

RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT4G25780

Predicted

Affinity Capture-MS

FSW = 0.0070

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT2G19980

Predicted

Phenotypic Suppression

FSW = 0.0912

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT3G54840

Predicted

Phenotypic Suppression

FSW = 0.0833

Unknown

ARA6 GTP BINDING / GTPASE
AT3G07140

Predicted

Phenotypic Suppression

FSW = 0.0933

Unknown

GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN
AT2G29540

Predicted

Affinity Capture-MS

FSW = 0.0386

Unknown

ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G05660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Co-purification

FSW = 0.3302

Unknown

POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE
AT1G07340

Predicted

Affinity Capture-MS

FSW = 0.0200

Unknown

ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G25260

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1752

Unknown

ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT1G05830

Predicted

Affinity Capture-MS

FSW = 0.0186

Unknown

ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC)
AT1G10210

Predicted

Phenotypic Enhancement

FSW = 0.0691

Unknown

ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT1G10980

Predicted

Phenotypic Enhancement

FSW = 0.0943

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 8 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G616701) HAS 482 BLAST HITS TO 481 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 255 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK)
AT1G25510

Predicted

Affinity Capture-MS

FSW = 0.1075

Unknown

ASPARTYL PROTEASE FAMILY PROTEIN
AT1G52500

Predicted

Phenotypic Suppression

FSW = 0.1254

Unknown

ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE
AT1G55300

Predicted

Phenotypic Enhancement

FSW = 0.1016

Unknown

TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G70290

Predicted

Affinity Capture-MS

FSW = 0.0149

Unknown

ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT2G23820

Predicted

Phenotypic Enhancement

FSW = 0.0248

Unknown

METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN
AT2G28720

Predicted

Affinity Capture-MS

FSW = 0.0417

Unknown

HISTONE H2B PUTATIVE
AT2G34980

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.2024

Unknown

SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE
AT2G46070

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2781

Unknown

MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE
AT2G47090

Predicted

Affinity Capture-MS

FSW = 0.0208

Unknown

NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT2G48100

Predicted

Phenotypic Suppression

FSW = 0.1307

Unknown

EXONUCLEASE FAMILY PROTEIN
AT3G11230

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1855

Unknown

YIPPEE FAMILY PROTEIN
AT3G18660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

Co-purification

FSW = 0.2887

Unknown

PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G22290

Predicted

Phenotypic Enhancement

FSW = 0.1857

Unknown

UNKNOWN PROTEIN
AT3G59540Predicted

Phenotypic Suppression

FSW = 0.1730

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT4G13020

Predicted

Phenotypic Enhancement

FSW = 0.0380

Unknown

MHK ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G24160

Predicted

Phenotypic Enhancement

FSW = 0.1287

Unknown

HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN
AT4G27130

Predicted

Phenotypic Enhancement

FSW = 0.1657

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT4G29580

Predicted

Phenotypic Enhancement

FSW = 0.0668

Unknown

CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE
AT5G01430

Predicted

Phenotypic Suppression

FSW = 0.0364

Unknown

GOT1-LIKE FAMILY PROTEIN
AT5G01640

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.3421

Unknown

PRA1B5 (PRENYLATED RAB ACCEPTOR 1B5)
AT5G15240

Predicted

Phenotypic Enhancement

FSW = 0.0345

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT5G16980

Predicted

Phenotypic Enhancement

FSW = 0.1440

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G20340

Predicted

Phenotypic Enhancement

FSW = 0.0683

Unknown

BG5 (BETA-13-GLUCANASE 5) GLUCAN 13-BETA-GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT5G25030

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3867

Unknown

ATP BINDING / NUCLEOTIDE BINDING / PHENYLALANINE-TRNA LIGASE
AT5G26250

Predicted

Affinity Capture-MS

FSW = 0.1914

Unknown

SUGAR TRANSPORTER PUTATIVE
AT5G37830

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-MS

Co-purification

FSW = 0.2656

Unknown

OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE
AT5G59850Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.2836

Unknown

40S RIBOSOMAL PROTEIN S15A (RPS15AF)
AT1G35350

Predicted

Phenotypic Enhancement

FSW = 0.1440

Unknown

LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK)
AT1G54560Predicted

Phenotypic Suppression

FSW = 0.0552

Unknown

XIE MOTOR/ PROTEIN BINDING
AT3G02000

Predicted

Phenotypic Enhancement

FSW = 0.0554

Unknown

ROXY1 DISULFIDE OXIDOREDUCTASE
AT3G12200

Predicted

Phenotypic Enhancement

FSW = 0.0895

Unknown

ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT5G13010

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-MS

FSW = 0.2477

Unknown

EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT5G44830

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2431

Unknown

GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN
AT5G52350

Predicted

Affinity Capture-MS

FSW = 0.0117

Unknown

ATEXO70A3 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A3) PROTEIN BINDING
AT1G43900

Predicted

interologs mapping

interologs mapping

FSW = 0.0401

Unknown

PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT2G43790

Predicted

Phenotypic Suppression

Phenotypic Suppression

FSW = 0.0179

Unknown

ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE
AT4G26070

Predicted

Phenotypic Suppression

FSW = 0.0347

Unknown

MEK1 (MAP KINASE/ ERK KINASE 1) MAP KINASE KINASE/ KINASE/ PROTEIN BINDING
AT1G69680

Predicted

Reconstituted Complex

two hybrid

FSW = 0.0202

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MOG1/PSBP/DUF1795 ALPHA/BETA/ALPHA SANDWICH (INTERPROIPR016124) RAN-INTERACTING MOG1 PROTEIN (INTERPROIPR007681) MOG1/PSBP ALPHA/BETA/ALPHA SANDWICH (INTERPROIPR016123) HAS 202 BLAST HITS TO 202 PROTEINS IN 100 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 55 FUNGI - 83 PLANTS - 25 VIRUSES - 0 OTHER EUKARYOTES - 39 (SOURCE NCBI BLINK)
AT5G24940

Predicted

interaction prediction

FSW = 0.0115

Unknown

PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454