Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G15920 - ( CCR4-NOT transcription complex protein putative )
89 Proteins interacs with AT1G15920Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78900 | PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0217
| Unknown | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT2G07698 | Predictedsynthetic growth defect | FSW = 0.0500
| Unknown | ATP SYNTHASE ALPHA CHAIN MITOCHONDRIAL PUTATIVE |
AT2G01690 | Predictedsynthetic growth defect | FSW = 0.0159
| Unknown | BINDING |
AT5G13450 | PredictedSynthetic Lethality | FSW = 0.0231
| Unknown | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
AT2G06530 | Predictedsynthetic growth defect | FSW = 0.0674
| Unknown | VPS21 |
AT3G02660 | PredictedSynthetic Lethality | FSW = 0.0378
| Unknown | EMB2768 (EMBRYO DEFECTIVE 2768) ATP BINDING / RNA BINDING / AMINOACYL-TRNA LIGASE/ NUCLEOTIDE BINDING / TYROSINE-TRNA LIGASE |
AT1G18440 | Predictedsynthetic growth defect | FSW = 0.0215
| Unknown | PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN |
AT5G09260 | PredictedSynthetic Lethality | FSW = 0.2217
| Unknown | VPS202 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 202) |
AT3G51460 | PredictedSynthetic Lethality | FSW = 0.0690
| Unknown | RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE |
AT4G16830 | Predictedinterologs mappinginterologs mappinginterologs mapping | FSW = 0.0319
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT4G05190 | PredictedSynthetic Lethality | FSW = 0.0826
| Unknown | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
AT3G12810 | Predictedsynthetic growth defect | FSW = 0.0960
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G44530 | Predictedsynthetic growth defect | FSW = 0.1242
| Unknown | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G43810 | PredictedSynthetic Lethality | FSW = 0.1074
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT3G17590 | PredictedSynthetic Lethality | FSW = 0.0352
| Unknown | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
AT1G19120 | PredictedSynthetic Lethality | FSW = 0.1485
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G03870 | PredictedSynthetic Lethality | FSW = 0.1300
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G63210 | PredictedSynthetic Rescue | FSW = 0.0262
| Unknown | RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / PROTEIN BINDING / TRANSCRIPTION ELONGATION REGULATOR |
AT1G06960 | PredictedSynthetic Lethality | FSW = 0.0295
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT4G38130 | PredictedSynthetic Lethality | FSW = 0.0554
| Unknown | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
AT1G07370 | PredictedPhenotypic EnhancementReconstituted Complex | FSW = 0.1160
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT2G27470 | PredictedReconstituted Complex | FSW = 0.0294
| Unknown | NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR |
AT3G19210 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.2459
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G55520 | PredictedSynthetic RescueCo-expression | FSW = 0.0174
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT1G43700 | Predictedtwo hybrid | FSW = 0.0184
| Unknown | VIP1 (VIRE2-INTERACTING PROTEIN 1) PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT3G05780 | PredictedSynthetic Lethality | FSW = 0.0592
| Unknown | LON3 (LON PROTEASE 3) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / SERINE-TYPE ENDOPEPTIDASE/ SERINE-TYPE PEPTIDASE |
AT1G35940 | Predictedsynthetic growth defect | FSW = 0.1885
| Unknown | LON3 (LON PROTEASE 3) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / SERINE-TYPE ENDOPEPTIDASE/ SERINE-TYPE PEPTIDASE |
AT1G50500 | PredictedSynthetic Lethality | FSW = 0.0714
| Unknown | HIT1 (HEAT-INTOLERANT 1) TRANSPORTER |
AT1G67630 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0674
| Unknown | POLA2 (DNA POLYMERASE ALPHA 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT1G71270 | PredictedSynthetic Lethality | FSW = 0.0384
| Unknown | POK (POKY POLLEN TUBE) |
AT3G47690 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.2245
| Unknown | ATEB1A MICROTUBULE BINDING |
AT2G31970 | PredictedSynthetic Lethality | FSW = 0.2107
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G54260 | PredictedSynthetic Lethality | FSW = 0.2098
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G36200 | PredictedSynthetic Lethality | FSW = 0.1045
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT1G77140 | Predictedsynthetic growth defect | FSW = 0.0816
| Unknown | VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER |
AT3G20050 | PredictedAffinity Capture-MS | FSW = 0.0067
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT5G20850 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1540
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT3G54860 | PredictedSynthetic Lethality | FSW = 0.1313
| Unknown | VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE |
AT3G58560 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridinterologs mappingCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationCo-purificationinterologs mappingtwo hybrid | FSW = 0.6124
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT1G33040 | PredictedAffinity Capture-MS | FSW = 0.0034
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
AT3G20800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0655
| Unknown | RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE |
AT1G02080 | Predictedtwo hybridSynthetic LethalityAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationSynthetic LethalitySynthetic Rescue | FSW = 0.1197
| Unknown | TRANSCRIPTIONAL REGULATOR-RELATED |
AT5G67100 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0899
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
AT5G41880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0942
| Unknown | POLA3 DNA PRIMASE |
AT1G67320 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0901
| Unknown | DNA PRIMASE LARGE SUBUNIT FAMILY |
AT1G07705 | Predictedtwo hybridSynthetic LethalityAffinity Capture-WesternAffinity Capture-WesternSynthetic Lethality | FSW = 0.1492
| Unknown | TRANSCRIPTION REGULATOR |
AT3G45630 | PredictedSynthetic LethalityAffinity Capture-WesternAffinity Capture-WesternSynthetic Lethality | FSW = 0.0733
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G18230 | PredictedSynthetic LethalitySynthetic LethalityAffinity Capture-WesternAffinity Capture-WesternSynthetic Lethality | FSW = 0.1020
| Unknown | TRANSCRIPTION REGULATOR NOT2/NOT3/NOT5 FAMILY PROTEIN |
AT5G35980 | PredictedAffinity Capture-Westernbiochemical | FSW = 0.0449
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G19050 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0228
| Unknown | ATP BINDING / PROTEIN BINDING |
AT2G45810 | PredictedAffinity Capture-WesternAffinity Capture-Westerninterologs mappingSynthetic Lethalitytwo hybrid | FSW = 0.0861
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.2223
| Unknown | ENDONUCLEASE PUTATIVE |
AT4G30870 | Predictedsynthetic growth defect | FSW = 0.1017
| Unknown | MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING |
AT4G25120 | Predictedsynthetic growth defect | FSW = 0.1812
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT3G42660 | Predictedsynthetic growth defect | FSW = 0.2549
| Unknown | NUCLEOTIDE BINDING |
AT3G07120 | Predictedsynthetic growth defect | FSW = 0.2508
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.2529
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G55255 | Predictedsynthetic growth defect | FSW = 0.2308
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G66740 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1950
| Unknown | SGA2 |
AT2G34050 | Predictedsynthetic growth defect | FSW = 0.0580
| Unknown | INVOLVED IN PROTEIN COMPLEX ASSEMBLY LOCATED IN MITOCHONDRION CHLOROPLAST EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ATP11 (INTERPROIPR010591) HAS 224 BLAST HITS TO 224 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 87 FUNGI - 80 PLANTS - 18 VIRUSES - 0 OTHER EUKARYOTES - 39 (SOURCE NCBI BLINK) |
AT1G04730 | Predictedsynthetic growth defect | FSW = 0.2549
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G54370 | Predictedsynthetic growth defect | FSW = 0.0577
| Unknown | NHX5 SODIUM ION TRANSMEMBRANE TRANSPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT5G40490 | Predictedsynthetic growth defect | FSW = 0.1566
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G23420 | Predictedsynthetic growth defect | FSW = 0.2037
| Unknown | NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
AT1G10930 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.1635
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT4G35890 | Predictedsynthetic growth defect | FSW = 0.0176
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
AT3G12400 | Predictedsynthetic growth defect | FSW = 0.1714
| Unknown | ELC UBIQUITIN BINDING |
AT3G45000 | Predictedsynthetic growth defect | FSW = 0.0799
| Unknown | VPS242 |
AT3G61710 | Predictedsynthetic growth defect | FSW = 0.0378
| Unknown | AUTOPHAGY PROTEIN APG6 FAMILY |
AT2G27600 | Predictedsynthetic growth defect | FSW = 0.0404
| Unknown | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G18000 | Predictedsynthetic growth defect | FSW = 0.1558
| Unknown | TAF14 (TBP-ASSOCIATED FACTOR 14) |
AT3G03420 | Predictedsynthetic growth defect | FSW = 0.0390
| Unknown | KU70-BINDING FAMILY PROTEIN |
AT5G13780 | PredictedSynthetic Lethality | FSW = 0.2279
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT1G80410 | PredictedSynthetic Lethality | FSW = 0.2088
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT5G10270 | PredictedSynthetic Lethality | FSW = 0.1394
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
AT2G37550 | PredictedSynthetic Lethality | FSW = 0.0242
| Unknown | AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT1G69680 | PredictedSynthetic Lethality | FSW = 0.0340
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MOG1/PSBP/DUF1795 ALPHA/BETA/ALPHA SANDWICH (INTERPROIPR016124) RAN-INTERACTING MOG1 PROTEIN (INTERPROIPR007681) MOG1/PSBP ALPHA/BETA/ALPHA SANDWICH (INTERPROIPR016123) HAS 202 BLAST HITS TO 202 PROTEINS IN 100 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 55 FUNGI - 83 PLANTS - 25 VIRUSES - 0 OTHER EUKARYOTES - 39 (SOURCE NCBI BLINK) |
AT5G27970 | PredictedSynthetic Lethality | FSW = 0.1119
| Unknown | BINDING |
AT1G14400 | PredictedSynthetic Lethality | FSW = 0.2156
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G10450 | PredictedSynthetic Lethality | FSW = 0.1313
| Unknown | SNL6 (SIN3-LIKE 6) |
AT4G27040 | PredictedSynthetic Lethality | FSW = 0.1492
| Unknown | VPS22 |
AT5G04920 | PredictedSynthetic Lethality | FSW = 0.1875
| Unknown | VACUOLAR PROTEIN SORTING 36 FAMILY PROTEIN / VPS36 FAMILY PROTEIN |
AT1G80780 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2084
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT3G44260 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1537
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT2G32070 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3312
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT3G44240 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1633
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G22250 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1633
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G10960 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6000
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT1G61470 | PredictedPhylogenetic profile method | FSW = 0.1537
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454