Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G54270 - ( EIF4A-2 ATP-dependent helicase/ translation initiation factor )

90 Proteins interacs with AT1G54270
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G01280

Predicted

Affinity Capture-MS

FSW = 0.0489

Class C:

vacuole

plasma membrane

VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL
AT2G33120

Predicted

Affinity Capture-MS

FSW = 0.0023

Class C:

vacuole

plasma membrane

SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)
AT1G72730

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0957

Class C:

vacuole

plasma membrane

EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE
AT3G12580

Predicted

Affinity Capture-MS

FSW = 0.0782

Class C:

vacuole

plasma membrane

HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT3G58510

Predicted

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.0201

Class C:

plasma membrane

DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT3G48750

Predicted

Affinity Capture-MS

FSW = 0.0065

Class C:

plasma membrane

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT2G14120

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1386

Class C:

plasma membrane

DYNAMIN-LIKE PROTEIN 2B (ADL2B)
AT3G09740

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1186

Class C:

plasma membrane

SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER
AT1G11250

Predicted

Affinity Capture-MS

FSW = 0.1066

Class C:

plasma membrane

SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR
AT3G18524

Predicted

interaction prediction

FSW = 0.0143

Class C:

plasma membrane

MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT4G38600

Predicted

Affinity Capture-MS

FSW = 0.0241

Class C:

plasma membrane

KAK (KAKTUS) UBIQUITIN-PROTEIN LIGASE
AT3G53110

Predicted

interologs mapping

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1301

Class C:

plasma membrane

LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE
AT1G79450

Predicted

Affinity Capture-MS

FSW = 0.0646

Class C:

plasma membrane

ALIS5 (ALA-INTERACTING SUBUNIT 5)
AT1G65040

Predicted

Affinity Capture-MS

FSW = 0.0070

Class C:

plasma membrane

PROTEIN BINDING / ZINC ION BINDING
AT3G47960

Predicted

Affinity Capture-MS

FSW = 0.0051

Class C:

plasma membrane

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT3G20390

Predicted

Affinity Capture-MS

FSW = 0.1203

Unknown

ENDORIBONUCLEASE L-PSP FAMILY PROTEIN
AT4G26970

Predicted

Affinity Capture-MS

FSW = 0.0538

Unknown

ACONITATE HYDRATASE/ COPPER ION BINDING
AT3G19160

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1911

Unknown

ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE
AT5G13050

Predicted

Affinity Capture-MS

FSW = 0.0670

Unknown

5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE
AT1G51040

Predicted

Affinity Capture-MS

FSW = 0.1584

Unknown

PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE
AT1G29900

Predicted

Affinity Capture-MS

Gene neighbors method

Co-expression

FSW = 0.0232

Unknown

CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC
AT3G12050

Predicted

Affinity Capture-MS

FSW = 0.0444

Unknown

AHA1 DOMAIN-CONTAINING PROTEIN
AT2G42520

Predicted

Synthetic Lethality

Synthetic Lethality

Enriched domain pair

Co-expression

FSW = 0.0323

Unknown

DEAD BOX RNA HELICASE PUTATIVE
AT5G54840

Predicted

interaction prediction

FSW = 0.0175

Unknown

SGP1 GTP BINDING
AT2G40290

Predicted

interaction prediction

FSW = 0.0332

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT3G19760

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1804

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE / DEAD BOX RNA HELICASE PUTATIVE
AT3G13920

Predicted

Enriched domain pair

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.2680

Unknown

EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT5G11170

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.1511

Unknown

ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT4G26600

Predicted

Affinity Capture-MS

FSW = 0.0391

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT3G12480

Predicted

interologs mapping

FSW = 0.0164

Unknown

NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR
AT1G72050

Predicted

Gene fusion method

FSW = 0.0182

Unknown

TFIIIA (TRANSCRIPTION FACTOR IIIA) 5S RDNA BINDING / 5S RRNA BINDING / NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT2G37470

Predicted

Affinity Capture-MS

FSW = 0.0577

Unknown

HISTONE H2B PUTATIVE
AT2G34720

Predicted

interaction prediction

FSW = 0.0289

Unknown

NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR
AT2G18760

Predicted

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.0340

Unknown

CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G18040

Predicted

interaction prediction

FSW = 0.0778

Unknown

EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT2G07687Predicted

interologs mapping

FSW = 0.0235

Unknown

CYTOCHROME C OXIDASE SUBUNIT 3
AT2G18450

Predicted

Affinity Capture-MS

FSW = 0.1122

Unknown

SDH1-2 SUCCINATE DEHYDROGENASE
AT4G30990

Predicted

Affinity Capture-MS

FSW = 0.0936

Unknown

BINDING
AT2G13650

Predicted

Affinity Capture-MS

FSW = 0.0395

Unknown

GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT4G33720

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0470

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT3G19690

Predicted

Affinity Capture-MS

FSW = 0.0243

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT5G47720

Predicted

Affinity Capture-MS

FSW = 0.0354

Unknown

ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE
AT4G26840

Predicted

Affinity Capture-MS

FSW = 0.0152

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT2G36200

Predicted

synthetic growth defect

FSW = 0.0025

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT3G05210

Predicted

interaction prediction

FSW = 0.0267

Unknown

ERCC1 5-FLAP ENDONUCLEASE
AT5G41480

Predicted

Affinity Capture-MS

FSW = 0.0633

Unknown

GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE
AT1G10490

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0037

Unknown

UNKNOWN PROTEIN
AT3G10610

Predicted

Affinity Capture-MS

FSW = 0.0174

Unknown

40S RIBOSOMAL PROTEIN S17 (RPS17C)
AT3G22880

Predicted

Affinity Capture-MS

FSW = 0.0323

Unknown

DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G17190

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0258

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G77990

Predicted

Affinity Capture-MS

FSW = 0.0118

Unknown

AST56 SULFATE TRANSMEMBRANE TRANSPORTER
AT1G15440

Predicted

Affinity Capture-MS

FSW = 0.0147

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G16360

Predicted

Affinity Capture-MS

FSW = 0.0479

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT1G20920

Predicted

Affinity Capture-MS

FSW = 0.0858

Unknown

DEAD BOX RNA HELICASE PUTATIVE
AT1G34460Predicted

Affinity Capture-MS

FSW = 0.0328

Unknown

CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G34580

Predicted

Affinity Capture-MS

FSW = 0.0291

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT5G46150

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1034

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT2G16740

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0957

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT3G05540

Predicted

Affinity Capture-MS

FSW = 0.0385

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK)
AT3G59790

Predicted

Affinity Capture-MS

FSW = 0.0424

Unknown

ATMPK10 MAP KINASE/ KINASE
AT4G11330

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0523

Unknown

ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE
AT4G26230

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0556

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT4G26810

Predicted

Affinity Capture-MS

FSW = 0.0377

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT4G32850

Predicted

Affinity Capture-MS

FSW = 0.0085

Unknown

NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING
AT4G35620

Predicted

Affinity Capture-MS

FSW = 0.0396

Unknown

CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G06600

Predicted

Affinity Capture-MS

FSW = 0.0094

Unknown

UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT5G17000

Predicted

Affinity Capture-MS

FSW = 0.1162

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G19820

Predicted

Affinity Capture-MS

FSW = 0.0691

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G65860

Predicted

Affinity Capture-MS

FSW = 0.0202

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT1G12650

Predicted

Affinity Capture-MS

FSW = 0.0215

Unknown

UNKNOWN PROTEIN
AT1G29550

Predicted

Affinity Capture-MS

Synthetic Lethality

FSW = 0.0588

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE
AT5G03220

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0192

Unknown

TRANSCRIPTIONAL CO-ACTIVATOR-RELATED
AT4G27640

Predicted

Affinity Capture-MS

FSW = 0.0319

Unknown

IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN
AT3G60240

Predicted

interaction prediction

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-Western

interologs mapping

Reconstituted Complex

Synthetic Lethality

FSW = 0.0344

Unknown

EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT3G09350

Predicted

Affinity Capture-MS

FSW = 0.0114

Unknown

ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN
AT3G03110

Predicted

Affinity Capture-MS

FSW = 0.0130

Unknown

XPO1B BINDING / PROTEIN TRANSPORTER
AT1G30820

Predicted

Affinity Capture-MS

Affinity Capture-MS

Gene neighbors method

Co-expression

FSW = 0.0192

Unknown

CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT1G16980

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0049

Unknown

ATTPS2 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT5G02150

Predicted

interaction prediction

FSW = 0.0240

Unknown

BINDING
AT4G39520

Predicted

interaction prediction

FSW = 0.0355

Unknown

GTP-BINDING PROTEIN PUTATIVE
AT3G13970

Predicted

interaction prediction

FSW = 0.0280

Unknown

APG12B (AUTOPHAGY 12 B)
AT1G78580

Predicted

interaction prediction

FSW = 0.0120

Unknown

ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE) ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G12670

Predicted

interaction prediction

FSW = 0.0186

Unknown

EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC
AT1G17130

Predicted

interaction prediction

FSW = 0.0132

Unknown

CELL CYCLE CONTROL PROTEIN-RELATED
AT1G16280

Predicted

interaction prediction

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0550

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G51380

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2237

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE
AT1G31360

Predicted

Enriched domain pair

Gene neighbors method

Co-expression

FSW = 0.0231

Unknown

RECQL2 (ARABIDOPSIS RECQ HELICASE L2) 3-5 DNA HELICASE/ ATP-DEPENDENT HELICASE/ FOUR-WAY JUNCTION HELICASE/ PROTEIN BINDING
AT5G60990

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1396

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH10)
AT3G02065

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.1722

Unknown

DEAD/DEAH BOX HELICASE FAMILY PROTEIN
AT5G11200

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.1190

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454