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AT1G54270 - ( EIF4A-2 ATP-dependent helicase/ translation initiation factor )

90 Proteins interacs with AT1G54270

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G01280	Predicted Affinity Capture-MS	FSW = 0.0489	Class C: vacuole plasma membrane	VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL
AT2G33120	Predicted Affinity Capture-MS	FSW = 0.0023	Class C: vacuole plasma membrane	SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)
AT1G72730	Predicted Enriched domain pair Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.0957	Class C: vacuole plasma membrane	EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE
AT3G12580	Predicted Affinity Capture-MS	FSW = 0.0782	Class C: vacuole plasma membrane	HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT3G58510	Predicted interaction prediction Enriched domain pair Co-expression	FSW = 0.0201	Class C: plasma membrane	DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT3G48750	Predicted Affinity Capture-MS	FSW = 0.0065	Class C: plasma membrane	CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT2G14120	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1386	Class C: plasma membrane	DYNAMIN-LIKE PROTEIN 2B (ADL2B)
AT3G09740	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1186	Class C: plasma membrane	SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER
AT1G11250	Predicted Affinity Capture-MS	FSW = 0.1066	Class C: plasma membrane	SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR
AT3G18524	Predicted interaction prediction	FSW = 0.0143	Class C: plasma membrane	MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT4G38600	Predicted Affinity Capture-MS	FSW = 0.0241	Class C: plasma membrane	KAK (KAKTUS) UBIQUITIN-PROTEIN LIGASE
AT3G53110	Predicted interologs mapping Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.1301	Class C: plasma membrane	LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE
AT1G79450	Predicted Affinity Capture-MS	FSW = 0.0646	Class C: plasma membrane	ALIS5 (ALA-INTERACTING SUBUNIT 5)
AT1G65040	Predicted Affinity Capture-MS	FSW = 0.0070	Class C: plasma membrane	PROTEIN BINDING / ZINC ION BINDING
AT3G47960	Predicted Affinity Capture-MS	FSW = 0.0051	Class C: plasma membrane	PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT3G20390	Predicted Affinity Capture-MS	FSW = 0.1203	Unknown	ENDORIBONUCLEASE L-PSP FAMILY PROTEIN
AT4G26970	Predicted Affinity Capture-MS	FSW = 0.0538	Unknown	ACONITATE HYDRATASE/ COPPER ION BINDING
AT3G19160	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1911	Unknown	ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE
AT5G13050	Predicted Affinity Capture-MS	FSW = 0.0670	Unknown	5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE
AT1G51040	Predicted Affinity Capture-MS	FSW = 0.1584	Unknown	PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE
AT1G29900	Predicted Affinity Capture-MS Gene neighbors method Co-expression	FSW = 0.0232	Unknown	CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC
AT3G12050	Predicted Affinity Capture-MS	FSW = 0.0444	Unknown	AHA1 DOMAIN-CONTAINING PROTEIN
AT2G42520	Predicted Synthetic Lethality Synthetic Lethality Enriched domain pair Co-expression	FSW = 0.0323	Unknown	DEAD BOX RNA HELICASE PUTATIVE
AT5G54840	Predicted interaction prediction	FSW = 0.0175	Unknown	SGP1 GTP BINDING
AT2G40290	Predicted interaction prediction	FSW = 0.0332	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT3G19760	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.1804	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE / DEAD BOX RNA HELICASE PUTATIVE
AT3G13920	Predicted Enriched domain pair Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.2680	Unknown	EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT5G11170	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.1511	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT4G26600	Predicted Affinity Capture-MS	FSW = 0.0391	Unknown	NUCLEOLAR PROTEIN PUTATIVE
AT3G12480	Predicted interologs mapping	FSW = 0.0164	Unknown	NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR
AT1G72050	Predicted Gene fusion method	FSW = 0.0182	Unknown	TFIIIA (TRANSCRIPTION FACTOR IIIA) 5S RDNA BINDING / 5S RRNA BINDING / NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT2G37470	Predicted Affinity Capture-MS	FSW = 0.0577	Unknown	HISTONE H2B PUTATIVE
AT2G34720	Predicted interaction prediction	FSW = 0.0289	Unknown	NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR
AT2G18760	Predicted interaction prediction Enriched domain pair Co-expression	FSW = 0.0340	Unknown	CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G18040	Predicted interaction prediction	FSW = 0.0778	Unknown	EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT2G07687	Predicted interologs mapping	FSW = 0.0235	Unknown	CYTOCHROME C OXIDASE SUBUNIT 3
AT2G18450	Predicted Affinity Capture-MS	FSW = 0.1122	Unknown	SDH1-2 SUCCINATE DEHYDROGENASE
AT4G30990	Predicted Affinity Capture-MS	FSW = 0.0936	Unknown	BINDING
AT2G13650	Predicted Affinity Capture-MS	FSW = 0.0395	Unknown	GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT4G33720	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0470	Unknown	PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT3G19690	Predicted Affinity Capture-MS	FSW = 0.0243	Unknown	PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT5G47720	Predicted Affinity Capture-MS	FSW = 0.0354	Unknown	ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE
AT4G26840	Predicted Affinity Capture-MS	FSW = 0.0152	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT2G36200	Predicted synthetic growth defect	FSW = 0.0025	Unknown	KINESIN MOTOR PROTEIN-RELATED
AT3G05210	Predicted interaction prediction	FSW = 0.0267	Unknown	ERCC1 5-FLAP ENDONUCLEASE
AT5G41480	Predicted Affinity Capture-MS	FSW = 0.0633	Unknown	GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE
AT1G10490	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0037	Unknown	UNKNOWN PROTEIN
AT3G10610	Predicted Affinity Capture-MS	FSW = 0.0174	Unknown	40S RIBOSOMAL PROTEIN S17 (RPS17C)
AT3G22880	Predicted Affinity Capture-MS	FSW = 0.0323	Unknown	DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G17190	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0258	Unknown	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G77990	Predicted Affinity Capture-MS	FSW = 0.0118	Unknown	AST56 SULFATE TRANSMEMBRANE TRANSPORTER
AT1G15440	Predicted Affinity Capture-MS	FSW = 0.0147	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G16360	Predicted Affinity Capture-MS	FSW = 0.0479	Unknown	LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT1G20920	Predicted Affinity Capture-MS	FSW = 0.0858	Unknown	DEAD BOX RNA HELICASE PUTATIVE
AT1G34460	Predicted Affinity Capture-MS	FSW = 0.0328	Unknown	CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G34580	Predicted Affinity Capture-MS	FSW = 0.0291	Unknown	MONOSACCHARIDE TRANSPORTER PUTATIVE
AT5G46150	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1034	Unknown	LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT2G16740	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0957	Unknown	UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT3G05540	Predicted Affinity Capture-MS	FSW = 0.0385	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK)
AT3G59790	Predicted Affinity Capture-MS	FSW = 0.0424	Unknown	ATMPK10 MAP KINASE/ KINASE
AT4G11330	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0523	Unknown	ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE
AT4G26230	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0556	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT4G26810	Predicted Affinity Capture-MS	FSW = 0.0377	Unknown	SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT4G32850	Predicted Affinity Capture-MS	FSW = 0.0085	Unknown	NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING
AT4G35620	Predicted Affinity Capture-MS	FSW = 0.0396	Unknown	CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G06600	Predicted Affinity Capture-MS	FSW = 0.0094	Unknown	UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT5G17000	Predicted Affinity Capture-MS	FSW = 0.1162	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G19820	Predicted Affinity Capture-MS	FSW = 0.0691	Unknown	EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G65860	Predicted Affinity Capture-MS	FSW = 0.0202	Unknown	ANKYRIN REPEAT FAMILY PROTEIN
AT1G12650	Predicted Affinity Capture-MS	FSW = 0.0215	Unknown	UNKNOWN PROTEIN
AT1G29550	Predicted Affinity Capture-MS Synthetic Lethality	FSW = 0.0588	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE
AT5G03220	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0192	Unknown	TRANSCRIPTIONAL CO-ACTIVATOR-RELATED
AT4G27640	Predicted Affinity Capture-MS	FSW = 0.0319	Unknown	IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN
AT3G60240	Predicted interaction prediction Reconstituted Complex Affinity Capture-MS Affinity Capture-Western interologs mapping Reconstituted Complex Synthetic Lethality	FSW = 0.0344	Unknown	EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT3G09350	Predicted Affinity Capture-MS	FSW = 0.0114	Unknown	ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN
AT3G03110	Predicted Affinity Capture-MS	FSW = 0.0130	Unknown	XPO1B BINDING / PROTEIN TRANSPORTER
AT1G30820	Predicted Affinity Capture-MS Affinity Capture-MS Gene neighbors method Co-expression	FSW = 0.0192	Unknown	CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT1G16980	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0049	Unknown	ATTPS2 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT5G02150	Predicted interaction prediction	FSW = 0.0240	Unknown	BINDING
AT4G39520	Predicted interaction prediction	FSW = 0.0355	Unknown	GTP-BINDING PROTEIN PUTATIVE
AT3G13970	Predicted interaction prediction	FSW = 0.0280	Unknown	APG12B (AUTOPHAGY 12 B)
AT1G78580	Predicted interaction prediction	FSW = 0.0120	Unknown	ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE) ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G12670	Predicted interaction prediction	FSW = 0.0186	Unknown	EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC
AT1G17130	Predicted interaction prediction	FSW = 0.0132	Unknown	CELL CYCLE CONTROL PROTEIN-RELATED
AT1G16280	Predicted interaction prediction Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.0550	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G51380	Predicted Enriched domain pair Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.2237	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE
AT1G31360	Predicted Enriched domain pair Gene neighbors method Co-expression	FSW = 0.0231	Unknown	RECQL2 (ARABIDOPSIS RECQ HELICASE L2) 3-5 DNA HELICASE/ ATP-DEPENDENT HELICASE/ FOUR-WAY JUNCTION HELICASE/ PROTEIN BINDING
AT5G60990	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.1396	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH10)
AT3G02065	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.1722	Unknown	DEAD/DEAH BOX HELICASE FAMILY PROTEIN
AT5G11200	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.1190	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT1G54270 - ( EIF4A-2 ATP-dependent helicase/ translation initiation factor )

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