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AT2G42740 - ( RPL16A structural constituent of ribosome )

78 Proteins interacs with AT2G42740

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G49910	Predicted Affinity Capture-MS	FSW = 0.4974	Class C: vacuole plastid plasma membrane nucleus	60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G18020	Predicted Affinity Capture-MS	FSW = 0.6270	Class C: vacuole plastid plasma membrane nucleus	EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G31700	Predicted Affinity Capture-MS	FSW = 0.4622	Class C: vacuole plastid plasma membrane nucleus	RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630	Predicted Affinity Capture-MS	FSW = 0.3391	Class C: vacuole plastid plasma membrane nucleus	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT3G09200	Predicted Affinity Capture-MS	FSW = 0.3197	Class C: vacuole plastid plasma membrane nucleus	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT2G17360	Predicted Affinity Capture-MS	FSW = 0.2138	Class C: vacuole plastid plasma membrane	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT2G47610	Predicted Affinity Capture-MS	FSW = 0.4491	Class C: vacuole plastid nucleus	60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT5G15200	Predicted Affinity Capture-MS	FSW = 0.4330	Class C: vacuole plastid nucleus	40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT1G33140	Predicted Affinity Capture-MS	FSW = 0.5052	Class C: vacuole plastid	PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G04920	Predicted Affinity Capture-MS	FSW = 0.6150	Class C: vacuole plasma membrane nucleus	40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT1G67430	Predicted Affinity Capture-MS	FSW = 0.6553	Class C: vacuole plasma membrane nucleus	60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.4584	Class C: vacuole plasma membrane nucleus	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G58700	Predicted Enriched domain pair Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.0771	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L11 (RPL11B)
AT2G37270	Predicted Affinity Capture-MS	FSW = 0.4568	Class C: vacuole plasma membrane	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.4756	Class C: vacuole plasma membrane	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480	Predicted Affinity Capture-MS	FSW = 0.4245	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT3G07680	Predicted Affinity Capture-MS	FSW = 0.0041	Class C: vacuole	EMP24/GP25L/P24 FAMILY PROTEIN
AT1G66580	Predicted Affinity Capture-MS	FSW = 0.5759	Class C: vacuole	60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT3G22845	Predicted Affinity Capture-MS	FSW = 0.0313	Class C: vacuole	EMP24/GP25L/P24 PROTEIN-RELATED
AT1G34030	Predicted Affinity Capture-MS	FSW = 0.2800	Class C: vacuole	40S RIBOSOMAL PROTEIN S18 (RPS18B)
AT4G18730	Predicted Enriched domain pair Gene fusion method Phylogenetic profile method	FSW = 0.1918	Class C: vacuole	RPL16B STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G45775	Predicted Enriched domain pair Gene fusion method Phylogenetic profile method	FSW = 0.0771	Class C: vacuole	60S RIBOSOMAL PROTEIN L11 (RPL11D)
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.3396	Class C: plastid plasma membrane nucleus	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT1G48830	Predicted Affinity Capture-MS	FSW = 0.4847	Class C: plastid plasma membrane	40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT2G09990	Predicted Affinity Capture-MS	FSW = 0.6104	Class C: plastid plasma membrane	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.4622	Class C: plastid	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT3G58510	Predicted Affinity Capture-MS	FSW = 0.1694	Class C: plasma membrane nucleus	DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT4G34670	Predicted Affinity Capture-MS	FSW = 0.5311	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT3G11510	Predicted Affinity Capture-MS	FSW = 0.6498	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT5G39740	Predicted Affinity Capture-MS	FSW = 0.3148	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT2G37190	Predicted Affinity Capture-MS	FSW = 0.5378	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT4G00100	Predicted Affinity Capture-MS	FSW = 0.4774	Class C: plasma membrane nucleus	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G27710	Predicted Affinity Capture-MS	FSW = 0.5378	Class C: plasma membrane nucleus	60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT5G62300	Predicted Affinity Capture-MS	FSW = 0.0899	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.6328	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT4G35020	Predicted Phenotypic Suppression	FSW = 0.0209	Class C: plasma membrane	ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE
AT5G46430	Predicted Affinity Capture-MS	FSW = 0.4463	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L32 (RPL32B)
AT1G41880	Predicted Affinity Capture-MS	FSW = 0.1921	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L35A (RPL35AB)
AT1G74270	Predicted Affinity Capture-MS	FSW = 0.2520	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L35A (RPL35AC)
AT1G70600	Predicted Affinity Capture-MS	FSW = 0.6702	Class C: plasma membrane	STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G02230	Predicted Affinity Capture-MS	FSW = 0.4969	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L19 (RPL19C)
AT4G15000	Predicted Affinity Capture-MS	FSW = 0.5541	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT3G53870	Predicted Affinity Capture-MS	FSW = 0.4123	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.5885	Class C: nucleus	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT3G23620	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Co-purification Co-expression	FSW = 0.1701	Class C: nucleus	BRIX DOMAIN-CONTAINING PROTEIN
AT4G17390	Predicted Affinity Capture-MS	FSW = 0.6496	Class C: nucleus	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT2G41840	Predicted Affinity Capture-MS	FSW = 0.2128	Class C: nucleus	40S RIBOSOMAL PROTEIN S2 (RPS2C)
AT3G53020	Predicted Affinity Capture-MS	FSW = 0.3924	Class C: nucleus	STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G58420	Predicted Affinity Capture-MS	FSW = 0.5171	Class C: nucleus	40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT5G19310	Predicted Affinity Capture-MS	FSW = 0.0228	Class C: nucleus	HOMEOTIC GENE REGULATOR PUTATIVE
AT1G74060	Predicted Affinity Capture-MS	FSW = 0.4969	Class C: nucleus	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT3G06700	Predicted Affinity Capture-MS	FSW = 0.3675	Class C: nucleus	60S RIBOSOMAL PROTEIN L29 (RPL29A)
AT4G25630	Predicted Affinity Capture-MS	FSW = 0.1749	Class C: nucleus	FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT4G26600	Predicted Affinity Capture-MS	FSW = 0.0443	Class C: nucleus	NUCLEOLAR PROTEIN PUTATIVE
AT1G72440	Predicted Affinity Capture-MS Co-expression	FSW = 0.2818	Class C: nucleus	EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT5G55920	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2018	Class C: nucleus	NUCLEOLAR PROTEIN PUTATIVE
AT2G37990	Predicted two hybrid Affinity Capture-Western Affinity Capture-Western two hybrid Co-purification Co-expression	FSW = 0.1055	Class C: nucleus	RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN
AT3G19980	Predicted Affinity Capture-MS	FSW = 0.0075	Unknown	ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G09500	Predicted Affinity Capture-MS	FSW = 0.4450	Unknown	40S RIBOSOMAL PROTEIN S15 (RPS15C)
AT1G10490	Predicted Affinity Capture-MS	FSW = 0.2668	Unknown	UNKNOWN PROTEIN
AT1G50920	Predicted Affinity Capture-MS	FSW = 0.2299	Unknown	GTP-BINDING PROTEIN-RELATED
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.5340	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G30800	Predicted Affinity Capture-MS	FSW = 0.3009	Unknown	40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT5G56710	Predicted Affinity Capture-MS	FSW = 0.4872	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT5G59240	Predicted Affinity Capture-MS	FSW = 0.4274	Unknown	40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT1G55150	Predicted Affinity Capture-MS	FSW = 0.0516	Unknown	DEAD BOX RNA HELICASE PUTATIVE (RH20)
AT1G04170	Predicted Affinity Capture-MS Co-expression	FSW = 0.0475	Unknown	EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT1G15440	Predicted Affinity Capture-MS Co-expression	FSW = 0.1151	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G57660	Predicted Affinity Capture-MS	FSW = 0.4098	Unknown	60S RIBOSOMAL PROTEIN L21 (RPL21E)
AT3G16840	Predicted Affinity Capture-MS	FSW = 0.1571	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G18740	Predicted Affinity Capture-MS	FSW = 0.5169	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT5G17000	Predicted Synthetic Lethality	FSW = 0.0071	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G20600	Predicted Affinity Capture-MS	FSW = 0.1540	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK)
AT3G23390	Predicted Affinity Capture-MS	FSW = 0.5115	Unknown	60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA)
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.5197	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.5556	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G65900	Predicted Affinity Capture-MS	FSW = 0.2929	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G50370	Predicted Affinity Capture-MS	FSW = 0.0069	Unknown	SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT2G42740 - ( RPL16A structural constituent of ribosome )

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