Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G42740 - ( RPL16A structural constituent of ribosome )

78 Proteins interacs with AT2G42740
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G49910

Predicted

Affinity Capture-MS

FSW = 0.4974

Class C:

vacuole

plastid

plasma membrane

nucleus

60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G18020

Predicted

Affinity Capture-MS

FSW = 0.6270

Class C:

vacuole

plastid

plasma membrane

nucleus

EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G31700

Predicted

Affinity Capture-MS

FSW = 0.4622

Class C:

vacuole

plastid

plasma membrane

nucleus

RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630

Predicted

Affinity Capture-MS

FSW = 0.3391

Class C:

vacuole

plastid

plasma membrane

nucleus

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT3G09200

Predicted

Affinity Capture-MS

FSW = 0.3197

Class C:

vacuole

plastid

plasma membrane

nucleus

60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT2G17360

Predicted

Affinity Capture-MS

FSW = 0.2138

Class C:

vacuole

plastid

plasma membrane

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT2G47610

Predicted

Affinity Capture-MS

FSW = 0.4491

Class C:

vacuole

plastid

nucleus

60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT5G15200

Predicted

Affinity Capture-MS

FSW = 0.4330

Class C:

vacuole

plastid

nucleus

40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT1G33140

Predicted

Affinity Capture-MS

FSW = 0.5052

Class C:

vacuole

plastid

PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G04920

Predicted

Affinity Capture-MS

FSW = 0.6150

Class C:

vacuole

plasma membrane

nucleus

40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT1G67430

Predicted

Affinity Capture-MS

FSW = 0.6553

Class C:

vacuole

plasma membrane

nucleus

60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT3G49010

Predicted

Affinity Capture-MS

FSW = 0.4584

Class C:

vacuole

plasma membrane

nucleus

ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G58700

Predicted

Enriched domain pair

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.0771

Class C:

vacuole

plasma membrane

60S RIBOSOMAL PROTEIN L11 (RPL11B)
AT2G37270

Predicted

Affinity Capture-MS

FSW = 0.4568

Class C:

vacuole

plasma membrane

ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770

Predicted

Affinity Capture-MS

FSW = 0.4756

Class C:

vacuole

plasma membrane

RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480

Predicted

Affinity Capture-MS

FSW = 0.4245

Class C:

vacuole

plasma membrane

60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT3G07680

Predicted

Affinity Capture-MS

FSW = 0.0041

Class C:

vacuole

EMP24/GP25L/P24 FAMILY PROTEIN
AT1G66580

Predicted

Affinity Capture-MS

FSW = 0.5759

Class C:

vacuole

60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT3G22845

Predicted

Affinity Capture-MS

FSW = 0.0313

Class C:

vacuole

EMP24/GP25L/P24 PROTEIN-RELATED
AT1G34030Predicted

Affinity Capture-MS

FSW = 0.2800

Class C:

vacuole

40S RIBOSOMAL PROTEIN S18 (RPS18B)
AT4G18730Predicted

Enriched domain pair

Gene fusion method

Phylogenetic profile method

FSW = 0.1918

Class C:

vacuole

RPL16B STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G45775Predicted

Enriched domain pair

Gene fusion method

Phylogenetic profile method

FSW = 0.0771

Class C:

vacuole

60S RIBOSOMAL PROTEIN L11 (RPL11D)
AT5G20290

Predicted

Affinity Capture-MS

FSW = 0.3396

Class C:

plastid

plasma membrane

nucleus

40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT1G48830

Predicted

Affinity Capture-MS

FSW = 0.4847

Class C:

plastid

plasma membrane

40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT2G09990

Predicted

Affinity Capture-MS

FSW = 0.6104

Class C:

plastid

plasma membrane

40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT3G13580

Predicted

Affinity Capture-MS

FSW = 0.4622

Class C:

plastid

60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT3G58510

Predicted

Affinity Capture-MS

FSW = 0.1694

Class C:

plasma membrane

nucleus

DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT4G34670

Predicted

Affinity Capture-MS

FSW = 0.5311

Class C:

plasma membrane

nucleus

40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT3G11510

Predicted

Affinity Capture-MS

FSW = 0.6498

Class C:

plasma membrane

nucleus

40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT5G39740

Predicted

Affinity Capture-MS

FSW = 0.3148

Class C:

plasma membrane

nucleus

60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT2G37190

Predicted

Affinity Capture-MS

FSW = 0.5378

Class C:

plasma membrane

nucleus

60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT4G00100

Predicted

Affinity Capture-MS

FSW = 0.4774

Class C:

plasma membrane

nucleus

ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G27710

Predicted

Affinity Capture-MS

FSW = 0.5378

Class C:

plasma membrane

nucleus

60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT5G62300

Predicted

Affinity Capture-MS

FSW = 0.0899

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT2G37600

Predicted

Affinity Capture-MS

FSW = 0.6328

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT4G35020

Predicted

Phenotypic Suppression

FSW = 0.0209

Class C:

plasma membrane

ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE
AT5G46430

Predicted

Affinity Capture-MS

FSW = 0.4463

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L32 (RPL32B)
AT1G41880

Predicted

Affinity Capture-MS

FSW = 0.1921

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L35A (RPL35AB)
AT1G74270

Predicted

Affinity Capture-MS

FSW = 0.2520

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L35A (RPL35AC)
AT1G70600

Predicted

Affinity Capture-MS

FSW = 0.6702

Class C:

plasma membrane

STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G02230

Predicted

Affinity Capture-MS

FSW = 0.4969

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L19 (RPL19C)
AT4G15000

Predicted

Affinity Capture-MS

FSW = 0.5541

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT3G53870

Predicted

Affinity Capture-MS

FSW = 0.4123

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT5G22440

Predicted

Affinity Capture-MS

FSW = 0.5885

Class C:

nucleus

60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT3G23620

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

Co-expression

FSW = 0.1701

Class C:

nucleus

BRIX DOMAIN-CONTAINING PROTEIN
AT4G17390

Predicted

Affinity Capture-MS

FSW = 0.6496

Class C:

nucleus

60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT2G41840

Predicted

Affinity Capture-MS

FSW = 0.2128

Class C:

nucleus

40S RIBOSOMAL PROTEIN S2 (RPS2C)
AT3G53020

Predicted

Affinity Capture-MS

FSW = 0.3924

Class C:

nucleus

STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G58420

Predicted

Affinity Capture-MS

FSW = 0.5171

Class C:

nucleus

40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT5G19310

Predicted

Affinity Capture-MS

FSW = 0.0228

Class C:

nucleus

HOMEOTIC GENE REGULATOR PUTATIVE
AT1G74060

Predicted

Affinity Capture-MS

FSW = 0.4969

Class C:

nucleus

60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT3G06700

Predicted

Affinity Capture-MS

FSW = 0.3675

Class C:

nucleus

60S RIBOSOMAL PROTEIN L29 (RPL29A)
AT4G25630

Predicted

Affinity Capture-MS

FSW = 0.1749

Class C:

nucleus

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT4G26600

Predicted

Affinity Capture-MS

FSW = 0.0443

Class C:

nucleus

NUCLEOLAR PROTEIN PUTATIVE
AT1G72440

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2818

Class C:

nucleus

EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT5G55920

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2018

Class C:

nucleus

NUCLEOLAR PROTEIN PUTATIVE
AT2G37990

Predicted

two hybrid

Affinity Capture-Western

Affinity Capture-Western

two hybrid

Co-purification

Co-expression

FSW = 0.1055

Class C:

nucleus

RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN
AT3G19980

Predicted

Affinity Capture-MS

FSW = 0.0075

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G09500

Predicted

Affinity Capture-MS

FSW = 0.4450

Unknown

40S RIBOSOMAL PROTEIN S15 (RPS15C)
AT1G10490

Predicted

Affinity Capture-MS

FSW = 0.2668

Unknown

UNKNOWN PROTEIN
AT1G50920

Predicted

Affinity Capture-MS

FSW = 0.2299

Unknown

GTP-BINDING PROTEIN-RELATED
AT1G61580

Predicted

Affinity Capture-MS

FSW = 0.5340

Unknown

RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G30800

Predicted

Affinity Capture-MS

FSW = 0.3009

Unknown

40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT5G56710

Predicted

Affinity Capture-MS

FSW = 0.4872

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT5G59240

Predicted

Affinity Capture-MS

FSW = 0.4274

Unknown

40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT1G55150

Predicted

Affinity Capture-MS

FSW = 0.0516

Unknown

DEAD BOX RNA HELICASE PUTATIVE (RH20)
AT1G04170

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0475

Unknown

EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT1G15440

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1151

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G57660Predicted

Affinity Capture-MS

FSW = 0.4098

Unknown

60S RIBOSOMAL PROTEIN L21 (RPL21E)
AT3G16840

Predicted

Affinity Capture-MS

FSW = 0.1571

Unknown

ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G18740

Predicted

Affinity Capture-MS

FSW = 0.5169

Unknown

60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT5G17000

Predicted

Synthetic Lethality

FSW = 0.0071

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G20600

Predicted

Affinity Capture-MS

FSW = 0.1540

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK)
AT3G23390

Predicted

Affinity Capture-MS

FSW = 0.5115

Unknown

60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA)
AT3G24830

Predicted

Affinity Capture-MS

FSW = 0.5197

Unknown

60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G55280

Predicted

Affinity Capture-MS

FSW = 0.5556

Unknown

RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G65900

Predicted

Affinity Capture-MS

FSW = 0.2929

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G50370

Predicted

Affinity Capture-MS

FSW = 0.0069

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454