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AT1G55520 - ( TBP2 (TATA BINDING PROTEIN 2) DNA binding / RNA polymerase II transcription factor/ TATA-binding protein binding )

108 Proteins interacs with AT1G55520

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT1G35160	Experimental pull down	FSW = 0.0169	Class A: nucleus Class B: plasma membrane cytosol cytoskeleton	GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G31720	Experimental two hybrid	FSW = 0.0928	Class A: nucleus Class D: nucleus (p = 0.78)	TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR
AT4G17750	Experimental Reconstituted Complex pull down affinity technology	FSW = 0.0283	Class A: nucleus Class D: nucleus (p = 0.78)	HSF1 (HEAT SHOCK FACTOR 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT5G67580	Experimental two hybrid	FSW = 0.0090	Class A: nucleus Class D: nucleus (p = 0.78)	TRB2 DNA BINDING / DOUBLE-STRANDED TELOMERIC DNA BINDING / PROTEIN HOMODIMERIZATION/ SINGLE-STRANDED TELOMERIC DNA BINDING / TRANSCRIPTION FACTOR
AT5G23080	Experimental two hybrid	FSW = 0.0091	Class D: nucleus (p = 0.78)	TGH (TOUGH) RNA BINDING / PROTEIN BINDING
AT1G32750	Experimental two hybrid	FSW = 0.2082	Unknown	HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE
AT3G04920	Predicted Affinity Capture-MS	FSW = 0.0077	Class C: nucleus	40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT1G33120	Predicted Affinity Capture-MS Gene neighbors method	FSW = 0.0283	Class C: nucleus	60S RIBOSOMAL PROTEIN L9 (RPL90B)
AT4G12610	Predicted Co-purification Reconstituted Complex	FSW = 0.1241	Class C: nucleus	TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN
AT1G07790	Predicted Affinity Capture-MS	FSW = 0.0585	Class C: nucleus	HTB1 DNA BINDING
AT5G22330	Predicted Reconstituted Complex Reconstituted Complex Affinity Capture-Western	FSW = 0.0626	Class C: nucleus	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING
AT3G58680	Predicted in vivo	FSW = 0.0805	Class C: nucleus	MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT2G44680	Predicted Affinity Capture-MS Affinity Capture-Western	FSW = 0.0538	Class C: nucleus	CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT5G11260	Predicted in vitro	FSW = 0.0179	Class C: nucleus	HY5 (ELONGATED HYPOCOTYL 5) DNA BINDING / DOUBLE-STRANDED DNA BINDING / TRANSCRIPTION FACTOR
AT3G54610	Predicted Affinity Capture-MS interologs mapping synthetic growth defect Synthetic Lethality	FSW = 0.1734	Class C: nucleus	GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT3G12480	Predicted Affinity Capture-Western interologs mapping in vitro in vivo Synthetic Lethality Enriched domain pair	FSW = 0.0384	Class C: nucleus	NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR
AT4G20340	Predicted Reconstituted Complex Co-purification in vitro	FSW = 0.1293	Class C: nucleus	RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G03280	Predicted in vitro	FSW = 0.0670	Class C: nucleus	TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN
AT1G44900	Predicted in vitro	FSW = 0.0113	Class C: nucleus	ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE
AT3G09360	Predicted in vivo in vivo in vitro in vitro Enriched domain pair Co-expression	FSW = 0.0548	Class C: nucleus	RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT5G08190	Predicted in vitro interologs mapping Enriched domain pair Co-expression	FSW = 0.0418	Class C: nucleus	NF-YB12 (NUCLEAR FACTOR Y SUBUNIT B12) DNA BINDING / TRANSCRIPTION FACTOR
AT2G01280	Predicted Reconstituted Complex Reconstituted Complex Reconstituted Complex interologs mapping interologs mapping Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Co-crystal Structure interologs mapping Reconstituted Complex Synthetic Rescue two hybrid Enriched domain pair Co-expression	FSW = 0.0731	Class C: nucleus	MEE65 (MATERNAL EFFECT EMBRYO ARREST 65) RNA POLYMERASE II TRANSCRIPTION FACTOR/ CATIONCHLORIDE SYMPORTER
AT3G13445	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.2848	Class C: nucleus	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT3G54280	Predicted Synthetic Lethality Reconstituted Complex Reconstituted Complex Reconstituted Complex Reconstituted Complex in vivo in vitro interologs mapping interologs mapping Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Reconstituted Complex Affinity Capture-MS Affinity Capture-Western Colocalization Co-purification interologs mapping Synthetic Lethality Synthetic Rescue	FSW = 0.0939	Class C: nucleus	RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G17020	Predicted Co-purification Reconstituted Complex Affinity Capture-Western	FSW = 0.0862	Class C: nucleus	TRANSCRIPTION FACTOR-RELATED
AT5G03720	Predicted in vitro in vivo	FSW = 0.0481	Class C: nucleus	AT-HSFA3 DNA BINDING / TRANSCRIPTION FACTOR
AT5G08180	Predicted Affinity Capture-MS	FSW = 0.0204	Class C: nucleus	RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT4G10670	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.2055	Class C: nucleus	GTC2
AT4G14540	Predicted in vivo in vitro Enriched domain pair Co-expression	FSW = 0.0247	Class C: nucleus	NF-YB3 (NUCLEAR FACTOR Y SUBUNIT B3) TRANSCRIPTION FACTOR
AT4G24440	Predicted Reconstituted Complex Reconstituted Complex Reconstituted Complex Reconstituted Complex Reconstituted Complex Reconstituted Complex in vivo in vivo in vivo in vitro in vitro in vitro interologs mapping interologs mapping Co-crystal Structure Co-crystal Structure Co-crystal Structure interologs mapping Reconstituted Complex Enriched domain pair Co-expression	FSW = 0.1634	Class C: nucleus	TRANSCRIPTION INITIATION FACTOR IIA GAMMA CHAIN / TFIIA-GAMMA (TFIIA-S)
AT1G18340	Predicted Co-purification	FSW = 0.0729	Class C: nucleus	BASAL TRANSCRIPTION FACTOR COMPLEX SUBUNIT-RELATED
AT3G05060	Predicted Affinity Capture-MS	FSW = 0.0084	Class C: nucleus	SAR DNA-BINDING PROTEIN PUTATIVE
AT1G17680	Predicted Reconstituted Complex in vitro in vivo Co-expression	FSW = 0.0781	Class C: nucleus	TRANSCRIPTION FACTOR-RELATED
AT2G47620	Predicted Affinity Capture-MS	FSW = 0.0373	Class C: nucleus	ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT2G41630	Predicted Reconstituted Complex Reconstituted Complex Reconstituted Complex Reconstituted Complex interologs mapping Co-purification Co-crystal Structure Co-purification interologs mapping in vitro in vivo Reconstituted Complex Synthetic Lethality Enriched domain pair Co-expression	FSW = 0.1444	Class C: nucleus	TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT1G08620	Predicted Reconstituted Complex	FSW = 0.0160	Class C: nucleus	TRANSCRIPTION FACTOR
AT5G25150	Predicted in vivo in vitro Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Reconstituted Complex	FSW = 0.1151	Class C: nucleus	TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR
AT1G67970	Predicted in vitro in vivo	FSW = 0.0650	Class C: nucleus	AT-HSFA8 DNA BINDING / TRANSCRIPTION FACTOR
AT1G06230	Predicted Affinity Capture-Western Affinity Capture-MS	FSW = 0.1221	Class C: nucleus	GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4) DNA BINDING
AT1G07470	Predicted Reconstituted Complex Reconstituted Complex Reconstituted Complex Reconstituted Complex Reconstituted Complex interologs mapping interologs mapping Co-crystal Structure Co-crystal Structure Co-crystal Structure Co-crystal Structure interologs mapping Reconstituted Complex Enriched domain pair	FSW = 0.1179	Class C: nucleus	TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE
AT4G39160	Predicted Reconstituted Complex interologs mapping Reconstituted Complex	FSW = 0.0352	Class C: nucleus	DNA BINDING / TRANSCRIPTION FACTOR
AT1G30810	Predicted in vitro Co-expression	FSW = 0.0041	Class C: nucleus	TRANSCRIPTION FACTOR
AT3G18100	Predicted in vitro	FSW = 0.0094	Class C: nucleus	MYB4R1 (MYB DOMAIN PROTEIN 4R1) TRANSCRIPTION FACTOR
AT1G69780	Predicted in vitro in vivo	FSW = 0.0092	Class C: nucleus	ATHB13 DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT2G38560	Predicted Synthetic Lethality	FSW = 0.0746	Class C: nucleus	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT1G02680	Predicted two hybrid in vitro Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.0729	Class C: nucleus	TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT3G06010	Predicted interologs mapping Synthetic Lethality	FSW = 0.1412	Class C: nucleus	ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G20010	Predicted Affinity Capture-MS	FSW = 0.0091	Unknown	TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G07660	Predicted Affinity Capture-MS	FSW = 0.0976	Unknown	HISTONE H4
AT1G18070	Predicted Affinity Capture-MS	FSW = 0.0172	Unknown	EF-1-ALPHA-RELATED GTP-BINDING PROTEIN PUTATIVE
AT4G35800	Predicted Reconstituted Complex Co-purification Reconstituted Complex Co-crystal Structure Colocalization	FSW = 0.0954	Unknown	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G23710	Predicted in vitro	FSW = 0.0338	Unknown	DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G49830	Predicted Affinity Capture-Western Reconstituted Complex Synthetic Lethality	FSW = 0.0672	Unknown	DNA HELICASE-RELATED
AT5G52640	Predicted Affinity Capture-MS	FSW = 0.0201	Unknown	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G53750	Predicted in vivo	FSW = 0.0333	Unknown	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE
AT5G19990	Predicted Affinity Capture-Western Reconstituted Complex	FSW = 0.0447	Unknown	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT3G12390	Predicted in vivo in vitro	FSW = 0.0092	Unknown	NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA CHAIN PROTEIN PUTATIVE / ALPHA-NAC PUTATIVE
AT2G19480	Predicted Affinity Capture-MS	FSW = 0.0528	Unknown	NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING
AT1G04750	Predicted synthetic growth defect	FSW = 0.0028	Unknown	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT1G09100	Predicted Affinity Capture-MS	FSW = 0.0476	Unknown	RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING
AT3G03490	Predicted Affinity Capture-MS	FSW = 0.0089	Unknown	PEX19-1 (PEROXIN 19-1)
AT1G75510	Predicted in vitro	FSW = 0.0825	Unknown	TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN
AT1G16190	Predicted Affinity Capture-Western	FSW = 0.0574	Unknown	DNA REPAIR PROTEIN RAD23 PUTATIVE
AT2G42680	Predicted Affinity Capture-Western Reconstituted Complex	FSW = 0.0191	Unknown	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT1G18100	Predicted Affinity Capture-MS	FSW = 0.0071	Unknown	E12A11 PHOSPHATIDYLETHANOLAMINE BINDING
AT5G09250	Predicted in vitro	FSW = 0.0845	Unknown	KIWI DNA BINDING / PROTEIN BINDING / TRANSCRIPTION COACTIVATOR
AT2G18230	Predicted Affinity Capture-MS	FSW = 0.0050	Unknown	ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT1G04950	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.1679	Unknown	TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G19485	Predicted Reconstituted Complex	FSW = 0.0515	Unknown	AT HOOK MOTIF-CONTAINING PROTEIN
AT3G51880	Predicted in vitro	FSW = 0.0082	Unknown	HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT4G20330	Predicted in vitro in vitro Co-expression	FSW = 0.0800	Unknown	TRANSCRIPTION INITIATION FACTOR-RELATED
AT4G23800	Predicted in vivo Co-expression	FSW = 0.0402	Unknown	HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN
AT1G13950	Predicted Synthetic Lethality	FSW = 0.0025	Unknown	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR
AT3G45240	Predicted synthetic growth defect	FSW = 0.0112	Unknown	GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE
AT3G54085	Predicted Affinity Capture-MS	FSW = 0.0202	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM CONTAINS INTERPRO DOMAIN/S YOS1-LIKE (INTERPROIPR013880) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G379751) HAS 139 BLAST HITS TO 139 PROTEINS IN 61 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 86 FUNGI - 16 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 11 (SOURCE NCBI BLINK)
AT4G33080	Predicted Affinity Capture-MS	FSW = 0.0042	Unknown	PROTEIN KINASE PUTATIVE
AT2G10440	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Reconstituted Complex	FSW = 0.2048	Unknown	UNKNOWN PROTEIN
AT3G07740	Predicted Affinity Capture-MS Affinity Capture-Western	FSW = 0.1226	Unknown	ADA2A (HOMOLOG OF YEAST ADA2 2A) DNA BINDING / TRANSCRIPTION FACTOR
AT1G16280	Predicted Affinity Capture-MS	FSW = 0.0131	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G08880	Predicted Affinity Capture-MS	FSW = 0.0706	Unknown	H2AXA DNA BINDING
AT3G16840	Predicted Affinity Capture-MS	FSW = 0.0084	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G04480	Predicted Affinity Capture-MS Gene neighbors method Co-expression	FSW = 0.0179	Unknown	60S RIBOSOMAL PROTEIN L23 (RPL23A)
AT5G08565	Predicted Affinity Capture-MS Co-expression	FSW = 0.0528	Unknown	POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT1G54140	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.0823	Unknown	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT2G17930	Predicted Affinity Capture-MS	FSW = 0.1231	Unknown	BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT2G47420	Predicted Affinity Capture-MS	FSW = 0.0095	Unknown	DIMETHYLADENOSINE TRANSFERASE PUTATIVE
AT4G34490	Predicted Affinity Capture-MS	FSW = 0.0087	Unknown	ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) ACTIN BINDING
AT1G29965	Predicted Affinity Capture-MS	FSW = 0.0195	Unknown	60S RIBOSOMAL PROTEIN L18A (RPL18AA)
AT1G26170	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS interologs mapping Reconstituted Complex	FSW = 0.1056	Unknown	BINDING / PROTEIN TRANSPORTER
AT4G19006	Predicted Affinity Capture-MS	FSW = 0.0353	Unknown	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT5G19820	Predicted Affinity Capture-Western	FSW = 0.0059	Unknown	EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT1G02080	Predicted Affinity Capture-Western interologs mapping Synthetic Rescue	FSW = 0.1012	Unknown	TRANSCRIPTIONAL REGULATOR-RELATED
AT2G23070	Predicted Affinity Capture-Western biochemical Co-expression	FSW = 0.0458	Unknown	CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT1G66740	Predicted Affinity Capture-Western interologs mapping	FSW = 0.0636	Unknown	SGA2
AT5G18230	Predicted Affinity Capture-Western	FSW = 0.1423	Unknown	TRANSCRIPTION REGULATOR NOT2/NOT3/NOT5 FAMILY PROTEIN
AT1G07705	Predicted Affinity Capture-Western	FSW = 0.0820	Unknown	TRANSCRIPTION REGULATOR
AT1G52740	Predicted Affinity Capture-Western	FSW = 0.1401	Unknown	HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT3G22590	Predicted co-fractionation Co-fractionation two hybrid	FSW = 0.0607	Unknown	RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT4G38630	Predicted co-fractionation Co-fractionation	FSW = 0.0257	Unknown	RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT3G47610	Predicted in vitro	FSW = 0.0111	Unknown	TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT1G55300	Predicted in vivo Co-expression	FSW = 0.0326	Unknown	TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT3G58560	Predicted Synthetic Lethality Synthetic Rescue	FSW = 0.0658	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT1G61040	Predicted Synthetic Rescue	FSW = 0.0571	Unknown	VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G09020	Predicted Synthetic Rescue	FSW = 0.0241	Unknown	SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR
AT1G32130	Predicted Synthetic Rescue	FSW = 0.0384	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G15920	Predicted Synthetic Rescue Co-expression	FSW = 0.0174	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT3G19040	Predicted two hybrid	FSW = 0.0810	Unknown	HAF2 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 2) DNA BINDING / HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR
AT3G47120	Predicted two hybrid	FSW = 0.0151	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT1G55520 - ( TBP2 (TATA BINDING PROTEIN 2) DNA binding / RNA polymerase II transcription factor/ TATA-binding protein binding )

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