Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G55520 - ( TBP2 (TATA BINDING PROTEIN 2) DNA binding / RNA polymerase II transcription factor/ TATA-binding protein binding )
108 Proteins interacs with AT1G55520Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G35160 | Experimentalpull down | FSW = 0.0169
| Class A:nucleusClass B:plasma membranecytosolcytoskeleton | GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G31720 | Experimentaltwo hybrid | FSW = 0.0928
| Class A:nucleusClass D:nucleus (p = 0.78) | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT4G17750 | ExperimentalReconstituted Complexpull downaffinity technology | FSW = 0.0283
| Class A:nucleusClass D:nucleus (p = 0.78) | HSF1 (HEAT SHOCK FACTOR 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT5G67580 | Experimentaltwo hybrid | FSW = 0.0090
| Class A:nucleusClass D:nucleus (p = 0.78) | TRB2 DNA BINDING / DOUBLE-STRANDED TELOMERIC DNA BINDING / PROTEIN HOMODIMERIZATION/ SINGLE-STRANDED TELOMERIC DNA BINDING / TRANSCRIPTION FACTOR |
AT5G23080 | Experimentaltwo hybrid | FSW = 0.0091
| Class D:nucleus (p = 0.78) | TGH (TOUGH) RNA BINDING / PROTEIN BINDING |
AT1G32750 | Experimentaltwo hybrid | FSW = 0.2082
| Unknown | HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE |
AT3G04920 | PredictedAffinity Capture-MS | FSW = 0.0077
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
AT1G33120 | PredictedAffinity Capture-MSGene neighbors method | FSW = 0.0283
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L9 (RPL90B) |
AT4G12610 | PredictedCo-purificationReconstituted Complex | FSW = 0.1241
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN |
AT1G07790 | PredictedAffinity Capture-MS | FSW = 0.0585
| Class C:nucleus | HTB1 DNA BINDING |
AT5G22330 | PredictedReconstituted ComplexReconstituted ComplexAffinity Capture-Western | FSW = 0.0626
| Class C:nucleus | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
AT3G58680 | Predictedin vivo | FSW = 0.0805
| Class C:nucleus | MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT2G44680 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0538
| Class C:nucleus | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT5G11260 | Predictedin vitro | FSW = 0.0179
| Class C:nucleus | HY5 (ELONGATED HYPOCOTYL 5) DNA BINDING / DOUBLE-STRANDED DNA BINDING / TRANSCRIPTION FACTOR |
AT3G54610 | PredictedAffinity Capture-MSinterologs mappingsynthetic growth defectSynthetic Lethality | FSW = 0.1734
| Class C:nucleus | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT3G12480 | PredictedAffinity Capture-Westerninterologs mappingin vitroin vivoSynthetic LethalityEnriched domain pair | FSW = 0.0384
| Class C:nucleus | NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G20340 | PredictedReconstituted ComplexCo-purificationin vitro | FSW = 0.1293
| Class C:nucleus | RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G03280 | Predictedin vitro | FSW = 0.0670
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN |
AT1G44900 | Predictedin vitro | FSW = 0.0113
| Class C:nucleus | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT3G09360 | Predictedin vivoin vivoin vitroin vitroEnriched domain pairCo-expression | FSW = 0.0548
| Class C:nucleus | RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT5G08190 | Predictedin vitrointerologs mappingEnriched domain pairCo-expression | FSW = 0.0418
| Class C:nucleus | NF-YB12 (NUCLEAR FACTOR Y SUBUNIT B12) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G01280 | PredictedReconstituted ComplexReconstituted ComplexReconstituted Complexinterologs mappinginterologs mappingAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-crystal Structureinterologs mappingReconstituted ComplexSynthetic Rescuetwo hybridEnriched domain pairCo-expression | FSW = 0.0731
| Class C:nucleus | MEE65 (MATERNAL EFFECT EMBRYO ARREST 65) RNA POLYMERASE II TRANSCRIPTION FACTOR/ CATIONCHLORIDE SYMPORTER |
AT3G13445 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2848
| Class C:nucleus | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT3G54280 | PredictedSynthetic LethalityReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted Complexin vivoin vitrointerologs mappinginterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-WesternColocalizationCo-purificationinterologs mappingSynthetic LethalitySynthetic Rescue | FSW = 0.0939
| Class C:nucleus | RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT4G17020 | PredictedCo-purificationReconstituted ComplexAffinity Capture-Western | FSW = 0.0862
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
AT5G03720 | Predictedin vitroin vivo | FSW = 0.0481
| Class C:nucleus | AT-HSFA3 DNA BINDING / TRANSCRIPTION FACTOR |
AT5G08180 | PredictedAffinity Capture-MS | FSW = 0.0204
| Class C:nucleus | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT4G10670 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.2055
| Class C:nucleus | GTC2 |
AT4G14540 | Predictedin vivoin vitroEnriched domain pairCo-expression | FSW = 0.0247
| Class C:nucleus | NF-YB3 (NUCLEAR FACTOR Y SUBUNIT B3) TRANSCRIPTION FACTOR |
AT4G24440 | PredictedReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted Complexin vivoin vivoin vivoin vitroin vitroin vitrointerologs mappinginterologs mappingCo-crystal StructureCo-crystal StructureCo-crystal Structureinterologs mappingReconstituted ComplexEnriched domain pairCo-expression | FSW = 0.1634
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIA GAMMA CHAIN / TFIIA-GAMMA (TFIIA-S) |
AT1G18340 | PredictedCo-purification | FSW = 0.0729
| Class C:nucleus | BASAL TRANSCRIPTION FACTOR COMPLEX SUBUNIT-RELATED |
AT3G05060 | PredictedAffinity Capture-MS | FSW = 0.0084
| Class C:nucleus | SAR DNA-BINDING PROTEIN PUTATIVE |
AT1G17680 | PredictedReconstituted Complexin vitroin vivoCo-expression | FSW = 0.0781
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
AT2G47620 | PredictedAffinity Capture-MS | FSW = 0.0373
| Class C:nucleus | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT2G41630 | PredictedReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted Complexinterologs mappingCo-purificationCo-crystal StructureCo-purificationinterologs mappingin vitroin vivoReconstituted ComplexSynthetic LethalityEnriched domain pairCo-expression | FSW = 0.1444
| Class C:nucleus | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT1G08620 | PredictedReconstituted Complex | FSW = 0.0160
| Class C:nucleus | TRANSCRIPTION FACTOR |
AT5G25150 | Predictedin vivoin vitroAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.1151
| Class C:nucleus | TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR |
AT1G67970 | Predictedin vitroin vivo | FSW = 0.0650
| Class C:nucleus | AT-HSFA8 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G06230 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1221
| Class C:nucleus | GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4) DNA BINDING |
AT1G07470 | PredictedReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted Complexinterologs mappinginterologs mappingCo-crystal StructureCo-crystal StructureCo-crystal StructureCo-crystal Structureinterologs mappingReconstituted ComplexEnriched domain pair | FSW = 0.1179
| Class C:nucleus | TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE |
AT4G39160 | PredictedReconstituted Complexinterologs mappingReconstituted Complex | FSW = 0.0352
| Class C:nucleus | DNA BINDING / TRANSCRIPTION FACTOR |
AT1G30810 | Predictedin vitroCo-expression | FSW = 0.0041
| Class C:nucleus | TRANSCRIPTION FACTOR |
AT3G18100 | Predictedin vitro | FSW = 0.0094
| Class C:nucleus | MYB4R1 (MYB DOMAIN PROTEIN 4R1) TRANSCRIPTION FACTOR |
AT1G69780 | Predictedin vitroin vivo | FSW = 0.0092
| Class C:nucleus | ATHB13 DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT2G38560 | PredictedSynthetic Lethality | FSW = 0.0746
| Class C:nucleus | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT1G02680 | Predictedtwo hybridin vitroAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0729
| Class C:nucleus | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT3G06010 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.1412
| Class C:nucleus | ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G20010 | PredictedAffinity Capture-MS | FSW = 0.0091
| Unknown | TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.0976
| Unknown | HISTONE H4 |
AT1G18070 | PredictedAffinity Capture-MS | FSW = 0.0172
| Unknown | EF-1-ALPHA-RELATED GTP-BINDING PROTEIN PUTATIVE |
AT4G35800 | PredictedReconstituted ComplexCo-purificationReconstituted ComplexCo-crystal StructureColocalization | FSW = 0.0954
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G23710 | Predictedin vitro | FSW = 0.0338
| Unknown | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G49830 | PredictedAffinity Capture-WesternReconstituted ComplexSynthetic Lethality | FSW = 0.0672
| Unknown | DNA HELICASE-RELATED |
AT5G52640 | PredictedAffinity Capture-MS | FSW = 0.0201
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G53750 | Predictedin vivo | FSW = 0.0333
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT5G19990 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0447
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT3G12390 | Predictedin vivoin vitro | FSW = 0.0092
| Unknown | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA CHAIN PROTEIN PUTATIVE / ALPHA-NAC PUTATIVE |
AT2G19480 | PredictedAffinity Capture-MS | FSW = 0.0528
| Unknown | NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING |
AT1G04750 | Predictedsynthetic growth defect | FSW = 0.0028
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT1G09100 | PredictedAffinity Capture-MS | FSW = 0.0476
| Unknown | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
AT3G03490 | PredictedAffinity Capture-MS | FSW = 0.0089
| Unknown | PEX19-1 (PEROXIN 19-1) |
AT1G75510 | Predictedin vitro | FSW = 0.0825
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT1G16190 | PredictedAffinity Capture-Western | FSW = 0.0574
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT2G42680 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0191
| Unknown | MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G18100 | PredictedAffinity Capture-MS | FSW = 0.0071
| Unknown | E12A11 PHOSPHATIDYLETHANOLAMINE BINDING |
AT5G09250 | Predictedin vitro | FSW = 0.0845
| Unknown | KIWI DNA BINDING / PROTEIN BINDING / TRANSCRIPTION COACTIVATOR |
AT2G18230 | PredictedAffinity Capture-MS | FSW = 0.0050
| Unknown | ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT1G04950 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1679
| Unknown | TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G19485 | PredictedReconstituted Complex | FSW = 0.0515
| Unknown | AT HOOK MOTIF-CONTAINING PROTEIN |
AT3G51880 | Predictedin vitro | FSW = 0.0082
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT4G20330 | Predictedin vitroin vitroCo-expression | FSW = 0.0800
| Unknown | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT4G23800 | Predictedin vivoCo-expression | FSW = 0.0402
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT1G13950 | PredictedSynthetic Lethality | FSW = 0.0025
| Unknown | ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR |
AT3G45240 | Predictedsynthetic growth defect | FSW = 0.0112
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT3G54085 | PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM CONTAINS INTERPRO DOMAIN/S YOS1-LIKE (INTERPROIPR013880) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G379751) HAS 139 BLAST HITS TO 139 PROTEINS IN 61 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 86 FUNGI - 16 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 11 (SOURCE NCBI BLINK) |
AT4G33080 | PredictedAffinity Capture-MS | FSW = 0.0042
| Unknown | PROTEIN KINASE PUTATIVE |
AT2G10440 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.2048
| Unknown | UNKNOWN PROTEIN |
AT3G07740 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.1226
| Unknown | ADA2A (HOMOLOG OF YEAST ADA2 2A) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G16280 | PredictedAffinity Capture-MS | FSW = 0.0131
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G08880 | PredictedAffinity Capture-MS | FSW = 0.0706
| Unknown | H2AXA DNA BINDING |
AT3G16840 | PredictedAffinity Capture-MS | FSW = 0.0084
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G04480 | PredictedAffinity Capture-MSGene neighbors methodCo-expression | FSW = 0.0179
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23A) |
AT5G08565 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0528
| Unknown | POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT1G54140 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0823
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT2G17930 | PredictedAffinity Capture-MS | FSW = 0.1231
| Unknown | BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT2G47420 | PredictedAffinity Capture-MS | FSW = 0.0095
| Unknown | DIMETHYLADENOSINE TRANSFERASE PUTATIVE |
AT4G34490 | PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) ACTIN BINDING |
AT1G29965 | PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
AT1G26170 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSinterologs mappingReconstituted Complex | FSW = 0.1056
| Unknown | BINDING / PROTEIN TRANSPORTER |
AT4G19006 | PredictedAffinity Capture-MS | FSW = 0.0353
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G19820 | PredictedAffinity Capture-Western | FSW = 0.0059
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT1G02080 | PredictedAffinity Capture-Westerninterologs mappingSynthetic Rescue | FSW = 0.1012
| Unknown | TRANSCRIPTIONAL REGULATOR-RELATED |
AT2G23070 | PredictedAffinity Capture-WesternbiochemicalCo-expression | FSW = 0.0458
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT1G66740 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0636
| Unknown | SGA2 |
AT5G18230 | PredictedAffinity Capture-Western | FSW = 0.1423
| Unknown | TRANSCRIPTION REGULATOR NOT2/NOT3/NOT5 FAMILY PROTEIN |
AT1G07705 | PredictedAffinity Capture-Western | FSW = 0.0820
| Unknown | TRANSCRIPTION REGULATOR |
AT1G52740 | PredictedAffinity Capture-Western | FSW = 0.1401
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT3G22590 | Predictedco-fractionationCo-fractionationtwo hybrid | FSW = 0.0607
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT4G38630 | Predictedco-fractionationCo-fractionation | FSW = 0.0257
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT3G47610 | Predictedin vitro | FSW = 0.0111
| Unknown | TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT1G55300 | Predictedin vivoCo-expression | FSW = 0.0326
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT3G58560 | PredictedSynthetic LethalitySynthetic Rescue | FSW = 0.0658
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT1G61040 | PredictedSynthetic Rescue | FSW = 0.0571
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT1G09020 | PredictedSynthetic Rescue | FSW = 0.0241
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT1G32130 | PredictedSynthetic Rescue | FSW = 0.0384
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK) |
AT1G15920 | PredictedSynthetic RescueCo-expression | FSW = 0.0174
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT3G19040 | Predictedtwo hybrid | FSW = 0.0810
| Unknown | HAF2 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 2) DNA BINDING / HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR |
AT3G47120 | Predictedtwo hybrid | FSW = 0.0151
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454