Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G43360 - ( BIO2 (BIOTIN AUXOTROPH 2) biotin synthase )

87 Proteins interacs with AT2G43360
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G32470

Predicted

Affinity Capture-MS

FSW = 0.2646

Unknown

UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE
AT2G01250

Predicted

Affinity Capture-MS

FSW = 0.3064

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7B)
AT2G20450

Predicted

Affinity Capture-MS

FSW = 0.2958

Unknown

60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT4G37910

Predicted

pull down

FSW = 0.0030

Unknown

MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT5G24780

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5570

Unknown

VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING
AT2G29990

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.6766

Unknown

NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE
AT2G19860

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3102

Unknown

HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G19980

Predicted

Affinity Capture-MS

FSW = 0.1746

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G15210

Predicted

Affinity Capture-MS

FSW = 0.2731

Unknown

PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT2G31170

Predicted

Affinity Capture-MS

FSW = 0.2156

Unknown

SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT4G26970

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5496

Unknown

ACONITATE HYDRATASE/ COPPER ION BINDING
AT4G01800

Predicted

pull down

FSW = 0.0147

Unknown

PREPROTEIN TRANSLOCASE SECA SUBUNIT PUTATIVE
AT4G23430

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4896

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT5G60390

Predicted

Affinity Capture-MS

FSW = 0.2122

Unknown

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT5G23740

Predicted

Affinity Capture-MS

FSW = 0.2176

Unknown

RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G75840

Predicted

Affinity Capture-MS

FSW = 0.3589

Unknown

ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE
AT1G27970

Predicted

Affinity Capture-MS

FSW = 0.4786

Unknown

NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT2G21540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.6132

Unknown

SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER
AT3G13560

Predicted

Affinity Capture-MS

FSW = 0.0552

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT1G11250

Predicted

Affinity Capture-MS

FSW = 0.0960

Unknown

SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR
AT5G62300

Predicted

Affinity Capture-MS

FSW = 0.3875

Unknown

40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT3G02870

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2135

Unknown

VTC4 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ L-GALACTOSE-1-PHOSPHATE PHOSPHATASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE
AT4G22120

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5617

Unknown

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT2G20580

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0343

Unknown

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT1G70490Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

two hybrid

Affinity Capture-Western

FSW = 0.2965

Unknown

ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT4G36860

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2944

Unknown

ZINC ION BINDING
AT3G11730

Predicted

Affinity Capture-MS

FSW = 0.0130

Unknown

ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING
AT1G09640

Predicted

Affinity Capture-MS

FSW = 0.2307

Unknown

ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT2G07640

Predicted

Affinity Capture-MS

FSW = 0.0903

Unknown

D2D4-DIENOYL-COA REDUCTASE-RELATED
AT2G47640

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2547

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT4G26600

Predicted

Affinity Capture-MS

FSW = 0.0530

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT4G29390Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0960

Unknown

40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT5G44500

Predicted

Affinity Capture-MS

FSW = 0.2688

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT2G39795

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2497

Unknown

MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN
AT3G20970

Predicted

Affinity Capture-Western

FSW = 0.1569

Unknown

NFU4 STRUCTURAL MOLECULE
AT3G10920

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5299

Unknown

MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE
AT5G57625

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5151

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT4G33710

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3281

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT5G47720

Predicted

Affinity Capture-MS

FSW = 0.0858

Unknown

ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE
AT3G08730

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3251

Unknown

PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G16050

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5441

Unknown

A37 PROTEIN HETERODIMERIZATION
AT2G27550

Predicted

Affinity Capture-MS

FSW = 0.1044

Unknown

ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) PHOSPHATIDYLETHANOLAMINE BINDING
AT1G10280

Predicted

Affinity Capture-MS

FSW = 0.0741

Unknown

UNKNOWN PROTEIN
AT1G24706

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5039

Unknown

UNKNOWN PROTEIN
AT1G63660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3107

Unknown

GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE
AT1G64480

Predicted

Affinity Capture-MS

FSW = 0.3221

Unknown

CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING
AT1G66240

Predicted

Affinity Capture-MS

FSW = 0.0333

Unknown

ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING
AT2G03410

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4141

Unknown

MO25 FAMILY PROTEIN
AT2G16740

Predicted

Affinity Capture-MS

FSW = 0.1934

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT2G19910

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5808

Unknown

RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN
AT2G37760

Predicted

Affinity Capture-Western

two hybrid

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interologs mapping

FSW = 0.3721

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT1G33090

Predicted

Affinity Capture-MS

FSW = 0.1287

Unknown

MATE EFFLUX FAMILY PROTEIN
AT1G34580

Predicted

Affinity Capture-MS

FSW = 0.1241

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G51770

Predicted

Affinity Capture-MS

FSW = 0.2908

Unknown

UNKNOWN PROTEIN
AT1G58520

Predicted

Affinity Capture-MS

FSW = 0.5457

Unknown

HYDROLASE ACTING ON ESTER BONDS / LIPASE
AT1G78290

Predicted

Affinity Capture-MS

FSW = 0.4365

Unknown

SERINE/THREONINE PROTEIN KINASE PUTATIVE
AT2G01770

Predicted

Affinity Capture-MS

FSW = 0.5319

Unknown

VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER
AT2G03040

Predicted

Affinity Capture-MS

FSW = 0.1432

Unknown

TRANSMEMBRANE PROTEIN-RELATED
AT2G17620

Predicted

Affinity Capture-MS

FSW = 0.2695

Unknown

CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G34250

Predicted

Affinity Capture-MS

FSW = 0.2536

Unknown

PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE
AT2G41530

Predicted

Affinity Capture-MS

FSW = 0.5408

Unknown

SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS
AT2G45080

Predicted

Affinity Capture-MS

FSW = 0.3057

Unknown

CYCP31 (CYCLIN P31) CYCLIN-DEPENDENT PROTEIN KINASE
AT2G46860

Predicted

Affinity Capture-MS

FSW = 0.4786

Unknown

ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT2G47570

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.3831

Unknown

60S RIBOSOMAL PROTEIN L18 (RPL18A)
AT3G11900

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5487

Unknown

ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER
AT3G12690

Predicted

Affinity Capture-MS

FSW = 0.2584

Unknown

AGC15 (AGC KINASE 15) KINASE
AT3G18850

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3443

Unknown

LPAT5 ACYLTRANSFERASE
AT3G30842

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3619

Unknown

PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G49880

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4761

Unknown

GLYCOSYL HYDROLASE FAMILY PROTEIN 43
AT3G51880

Predicted

Affinity Capture-MS

FSW = 0.5073

Unknown

HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT3G52560

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1893

Unknown

UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G53730

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5743

Unknown

HISTONE H4
AT3G54150

Predicted

Affinity Capture-MS

FSW = 0.2823

Unknown

EMBRYO-ABUNDANT PROTEIN-RELATED
AT3G59410

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5756

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G17380

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3210

Unknown

MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING
AT4G19645

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3820

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK)
AT4G20280

Predicted

Affinity Capture-MS

FSW = 0.0544

Unknown

TAF11 (TBP-ASSOCIATED FACTOR 11) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT4G35620

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5441

Unknown

CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G19150

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

FSW = 0.5567

Unknown

CARBOHYDRATE KINASE FAMILY
AT5G19820

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4144

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G20060

Predicted

Affinity Capture-MS

FSW = 0.4687

Unknown

PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN
AT5G27640

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4825

Unknown

TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT5G57890

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3711

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT3G20650

Predicted

Affinity Capture-MS

FSW = 0.3167

Unknown

MRNA CAPPING ENZYME FAMILY PROTEIN
AT4G25860

Predicted

Affinity Capture-MS

FSW = 0.3509

Unknown

ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING
AT4G26810

Predicted

Affinity Capture-MS

FSW = 0.3834

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT5G57330

Predicted

Affinity Capture-MS

FSW = 0.1309

Unknown

ALDOSE 1-EPIMERASE FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454