Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G01090 - ( AKIN10 (Arabidopsis SNF1 kinase homolog 10) protein binding / protein kinase )

114 Proteins interacs with AT3G01090
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G51260

Experimental

Reconstituted Complex

two hybrid

Co-purification

FSW = 0.0144

Unknown

PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G75950

Experimental

two hybrid

Reconstituted Complex

FSW = 0.0044

Unknown

SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G15900

Experimental

two hybrid

pull down

Reconstituted Complex

FSW = 0.0074

Unknown

PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G14250

Experimental

interaction detection method

FSW = 0.0053

Unknown

COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) PROTEIN BINDING
AT3G29160

Experimental

interaction detection method

FSW = 0.1333

Unknown

AKIN11 (ARABIDOPSIS SNF1 KINASE HOMOLOG 11) PROTEIN BINDING / PROTEIN KINASE
AT1G09020

Experimental

two hybrid

two hybrid

Reconstituted Complex

two hybrid

Reconstituted Complex

in vitro

FSW = 0.1663

Unknown

SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR
AT4G16360

Experimental

two hybrid

Affinity Capture-Western

FSW = 0.0467

Unknown

AMP-ACTIVATED PROTEIN KINASE
YGL115WExperimental

two hybrid

FSW = 0.0833

Unknown

AMP-ACTIVATED PROTEIN KINASE
AT4G29130

Predicted

Affinity Capture-Western

FSW = 0.0098

Unknown

HXK1 (HEXOKINASE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT2G47610

Predicted

biochemical

FSW = 0.0086

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT1G61000

Predicted

two hybrid

FSW = 0.0047

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN MITOSIS LOCATED IN PLASMA MEMBRANE EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NUF2 (INTERPROIPR005549) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G643301) HAS 41010 BLAST HITS TO 23184 PROTEINS IN 1264 SPECIES ARCHAE - 616 BACTERIA - 3998 METAZOA - 20566 FUNGI - 2893 PLANTS - 1316 VIRUSES - 149 OTHER EUKARYOTES - 11472 (SOURCE NCBI BLINK)
AT3G12580

Predicted

Affinity Capture-MS

FSW = 0.0311

Unknown

HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT5G47560

Predicted

biochemical

FSW = 0.0088

Unknown

TDT (TONOPLAST DICARBOXYLATE TRANSPORTER) MALATE TRANSMEMBRANE TRANSPORTER/ SODIUMDICARBOXYLATE SYMPORTER
AT3G19980

Predicted

Synthetic Rescue

FSW = 0.0233

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G02520

Predicted

Affinity Capture-MS

FSW = 0.0539

Unknown

GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G16030

Predicted

Affinity Capture-MS

FSW = 0.0381

Unknown

HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING
AT3G45770

Predicted

two hybrid

FSW = 0.0160

Unknown

OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN
AT2G45300

Predicted

Phenotypic Enhancement

FSW = 0.0378

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT1G24360

Predicted

biochemical

FSW = 0.0114

Unknown

3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE CHLOROPLAST / 3-KETOACYL-ACYL CARRIER PROTEIN REDUCTASE
AT5G63110

Predicted

Phenotypic Enhancement

FSW = 0.1013

Unknown

HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT5G38480

Predicted

Affinity Capture-MS

FSW = 0.0744

Unknown

GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G07940Predicted

biochemical

FSW = 0.0282

Unknown

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G35160

Predicted

Affinity Capture-MS

FSW = 0.0225

Unknown

GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G11890

Predicted

Phenotypic Enhancement

FSW = 0.0525

Unknown

SEC22 TRANSPORTER
AT1G36160

Predicted

Synthetic Rescue

FSW = 0.0379

Unknown

ACC1 (ACETYL-COENZYME A CARBOXYLASE 1) ACETYL-COA CARBOXYLASE
AT4G29810

Predicted

Phenotypic Enhancement

FSW = 0.0163

Unknown

ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE
AT5G52640

Predicted

Synthetic Lethality

FSW = 0.0618

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G05570

Predicted

interaction prediction

FSW = 0.0087

Unknown

CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT5G12370

Predicted

interologs mapping

FSW = 0.0170

Unknown

SEC10 (EXOCYST COMPLEX COMPONENT SEC10)
AT1G20970Predicted

interologs mapping

FSW = 0.0145

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK)
AT1G01710

Predicted

biochemical

FSW = 0.0305

Unknown

ACYL-COA THIOESTERASE FAMILY PROTEIN
AT1G75560

Predicted

interologs mapping

FSW = 0.0109

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G54610

Predicted

Reconstituted Complex

biochemical

FSW = 0.0582

Unknown

GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT3G57660

Predicted

Phenotypic Enhancement

FSW = 0.0177

Unknown

NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING
AT4G10710

Predicted

biochemical

FSW = 0.0323

Unknown

SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT1G72050

Predicted

Phenotypic Enhancement

FSW = 0.0145

Unknown

TFIIIA (TRANSCRIPTION FACTOR IIIA) 5S RDNA BINDING / 5S RRNA BINDING / NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT5G48240

Predicted

biochemical

FSW = 0.0384

Unknown

UNKNOWN PROTEIN
AT5G54910

Predicted

biochemical

FSW = 0.0178

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT2G24500

Predicted

Phenotypic Enhancement

FSW = 0.0185

Unknown

FZF TRANSCRIPTION FACTOR
AT2G38560

Predicted

Phenotypic Enhancement

FSW = 0.0786

Unknown

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT3G22830

Predicted

two hybrid

biochemical

FSW = 0.0439

Unknown

AT-HSFA6B DNA BINDING / TRANSCRIPTION FACTOR
AT5G08630

Predicted

Phenotypic Enhancement

FSW = 0.0231

Unknown

DDT DOMAIN-CONTAINING PROTEIN
AT4G18880

Predicted

biochemical

two hybrid

FSW = 0.0122

Unknown

AT-HSFA4A DNA BINDING / TRANSCRIPTION FACTOR
AT1G10060

Predicted

two hybrid

FSW = 0.0077

Unknown

BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1)
AT1G01020

Predicted

biochemical

FSW = 0.0069

Unknown

ARV1
AT5G37810

Predicted

biochemical

FSW = 0.0318

Unknown

NIP41 (NOD26-LIKE INTRINSIC PROTEIN 41) WATER CHANNEL
AT4G26840

Predicted

Affinity Capture-MS

FSW = 0.0147

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT5G54260

Predicted

Phenotypic Enhancement

FSW = 0.0419

Unknown

MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G04130

Predicted

biochemical

FSW = 0.0458

Unknown

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT1G07830

Predicted

biochemical

FSW = 0.0049

Unknown

RIBOSOMAL PROTEIN L29 FAMILY PROTEIN
AT1G13580

Predicted

biochemical

FSW = 0.0046

Unknown

LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)
AT1G17145

Predicted

Affinity Capture-Western

two hybrid

FSW = 0.0359

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT1G24290

Predicted

two hybrid

interaction prediction

FSW = 0.0198

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G51710

Predicted

biochemical

FSW = 0.0727

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G73570

Predicted

biochemical

FSW = 0.0520

Unknown

SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED
AT1G74250

Predicted

biochemical

FSW = 0.0062

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT2G16710

Predicted

biochemical

FSW = 0.0055

Unknown

HESB-LIKE DOMAIN-CONTAINING PROTEIN
AT2G19170

Predicted

Affinity Capture-MS

FSW = 0.0161

Unknown

SLP3 SERINE-TYPE PEPTIDASE
AT2G20560

Predicted

biochemical

FSW = 0.0149

Unknown

DNAJ HEAT SHOCK FAMILY PROTEIN
AT2G32730

Predicted

biochemical

FSW = 0.0272

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT2G34500

Predicted

biochemical

FSW = 0.0269

Unknown

CYP710A1 (CYTOCHROME P450 FAMILY 710 SUBFAMILY A POLYPEPTIDE 1) C-22 STEROL DESATURASE/ OXYGEN BINDING
AT2G37840

Predicted

interologs mapping

FSW = 0.1488

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT2G40430

Predicted

biochemical

FSW = 0.0194

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK)
AT1G49980

Predicted

Affinity Capture-MS

FSW = 0.0459

Unknown

DNA-DIRECTED DNA POLYMERASE/ DAMAGED DNA BINDING
AT1G52740

Predicted

Phenotypic Enhancement

FSW = 0.1121

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G63160

Predicted

Phenotypic Enhancement

FSW = 0.0263

Unknown

REPLICATION FACTOR C 40 KDA PUTATIVE
AT2G02760

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.0577

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G13680

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0152

Unknown

CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE
AT2G39840

Predicted

Affinity Capture-MS

FSW = 0.0420

Unknown

TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G43790

Predicted

Phenotypic Enhancement

FSW = 0.0368

Unknown

ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE
AT3G02820

Predicted

Phenotypic Enhancement

FSW = 0.0166

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G56640

Predicted

interologs mapping

FSW = 0.0191

Unknown

EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN
AT3G63150

Predicted

synthetic growth defect

FSW = 0.0037

Unknown

MIRO2 (MIRO-RELATED GTP-ASE 2) GTPASE/ CALCIUM ION BINDING
AT5G10260

Predicted

Phenotypic Enhancement

FSW = 0.0393

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G10270

Predicted

two hybrid

synthetic growth defect

Phenotypic Enhancement

Affinity Capture-Western

Co-expression

FSW = 0.0942

Unknown

CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G19680

Predicted

Affinity Capture-MS

FSW = 0.0238

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN
AT5G21170

Predicted

interaction prediction

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

two hybrid

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0686

Unknown

5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE
AT5G48640

Predicted

Affinity Capture-Western

Phenotypic Suppression

two hybrid

Synthetic Rescue

FSW = 0.0648

Unknown

CYCLIN FAMILY PROTEIN
AT5G53770

Predicted

synthetic growth defect

FSW = 0.0267

Unknown

NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT5G60550

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

biochemical

biochemical

Affinity Capture-Western

biochemical

co-fractionation

Co-fractionation

Affinity Capture-MS

FSW = 0.0264

Unknown

GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE
AT5G63610

Predicted

two hybrid

Synthetic Rescue

Affinity Capture-Western

interaction prediction

FSW = 0.0699

Unknown

CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G02320

Predicted

biochemical

FSW = 0.0219

Unknown

RNA BINDING / TRNA (GUANINE-N2-)-METHYLTRANSFERASE
AT3G04710

Predicted

biochemical

FSW = 0.0203

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT3G09560

Predicted

biochemical

FSW = 0.0298

Unknown

LIPIN FAMILY PROTEIN
AT3G15470

Predicted

biochemical

FSW = 0.0207

Unknown

WD-40 REPEAT FAMILY PROTEIN
AT3G18520

Predicted

Phenotypic Enhancement

FSW = 0.0813

Unknown

HDA15 HISTONE DEACETYLASE
AT3G49660

Predicted

Synthetic Rescue

Phenotypic Suppression

FSW = 0.0814

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G52390

Predicted

biochemical

FSW = 0.0068

Unknown

TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT3G60860

Predicted

Affinity Capture-MS

FSW = 0.0068

Unknown

GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN
AT4G05320

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0035

Unknown

UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING
AT4G05330

Predicted

biochemical

FSW = 0.0161

Unknown

AGD13 (ARF-GAP DOMAIN 13) ARF GTPASE ACTIVATOR/ ZINC ION BINDING
AT4G10310

Predicted

interologs mapping

FSW = 0.0139

Unknown

HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1) SODIUM ION TRANSMEMBRANE TRANSPORTER
AT4G17890

Predicted

biochemical

FSW = 0.0608

Unknown

AGD8 (ARF-GAP DOMAIN 8) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT4G32720

Predicted

biochemical

FSW = 0.0219

Unknown

ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1) RNA BINDING
AT5G10390Predicted

interologs mapping

FSW = 0.0707

Unknown

HISTONE H3
AT5G10400Predicted

biochemical

interologs mapping

FSW = 0.0885

Unknown

HISTONE H3
AT5G54200

Predicted

biochemical

FSW = 0.0149

Unknown

WD-40 REPEAT FAMILY PROTEIN
AT5G61150

Predicted

biochemical

FSW = 0.0859

Unknown

VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT5G61770

Predicted

biochemical

FSW = 0.0239

Unknown

PPAN (PETER PAN-LIKE PROTEIN)
AT5G65180

Predicted

Phenotypic Enhancement

FSW = 0.0571

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK)
AT5G65900

Predicted

biochemical

FSW = 0.0119

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G67320

Predicted

Phenotypic Enhancement

FSW = 0.0331

Unknown

HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15)
AT5G44740

Predicted

Affinity Capture-MS

FSW = 0.0093

Unknown

POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE
AT3G45240

Predicted

biochemical

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

biochemical

co-fractionation

Co-fractionation

FSW = 0.0257

Unknown

GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE
AT1G01960

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0075

Unknown

EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT5G48630

Predicted

interaction prediction

Affinity Capture-Western

Synthetic Rescue

two hybrid

Enriched domain pair

Co-expression

FSW = 0.0167

Unknown

CYCLIN FAMILY PROTEIN
AT1G09200Predicted

biochemical

interologs mapping

FSW = 0.0336

Unknown

HISTONE H3
AT4G26070

Predicted

Phenotypic Enhancement

FSW = 0.0278

Unknown

MEK1 (MAP KINASE/ ERK KINASE 1) MAP KINASE KINASE/ KINASE/ PROTEIN BINDING
AT1G14400

Predicted

synthetic growth defect

Enriched domain pair

Co-expression

FSW = 0.0347

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT1G50370

Predicted

Synthetic Rescue

FSW = 0.0236

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE
AT1G15780

Predicted

Synthetic Rescue

Synthetic Rescue

interaction prediction

FSW = 0.0421

Unknown

UNKNOWN PROTEIN
AT2G32850

Predicted

interaction prediction

FSW = 0.0320

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G39440

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0305

Unknown

SNRK13 (SNF1-RELATED PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G16420

Predicted

Gene fusion method

FSW = 0.0080

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454