Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G39330 - ( CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) binding / catalytic/ oxidoreductase/ zinc ion binding )
125 Proteins interacs with AT4G39330Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G42980 | Experimentalenzymatic study | FSW = 0.0053
| Unknown | ATTRX3 (THIOREDOXIN 3) OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.6093
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT2G36160 | PredictedAffinity Capture-MS | FSW = 0.2157
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.4569
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT3G56190 | PredictedAffinity Capture-MS | FSW = 0.3851
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT3G62150 | PredictedAffinity Capture-MS | FSW = 0.1581
| Unknown | PGP21 (P-GLYCOPROTEIN 21) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.4913
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.5860
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G20390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3927
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT3G08950 | PredictedAffinity Capture-MS | FSW = 0.5931
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.4516
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.4634
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G18540 | PredictedAffinity Capture-MS | FSW = 0.2285
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.5708
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.3728
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.6033
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT5G65430 | PredictedAffinity Capture-MS | FSW = 0.1314
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G31170 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3672
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT1G21640 | PredictedAffinity Capture-MS | FSW = 0.1925
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT3G19160 | PredictedAffinity Capture-MS | FSW = 0.2144
| Unknown | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE |
AT5G13050 | PredictedAffinity Capture-MS | FSW = 0.5602
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT1G80030 | PredictedAffinity Capture-MS | FSW = 0.1817
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.3954
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT3G06040 | PredictedSynthetic LethalityAffinity Capture-MS | FSW = 0.5129
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.3998
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G45420 | PredictedAffinity Capture-MS | FSW = 0.5143
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT5G23740 | PredictedAffinity Capture-MS | FSW = 0.4616
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.5008
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G14120 | PredictedAffinity Capture-MS | FSW = 0.1327
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT3G61430 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2974
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT4G28950 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2028
| Unknown | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT3G13560 | PredictedAffinity Capture-MS | FSW = 0.1305
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT4G34230 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1014
| Unknown | ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5) CINNAMYL-ALCOHOL DEHYDROGENASE |
AT3G09740 | PredictedAffinity Capture-MS | FSW = 0.2400
| Unknown | SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.4081
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.5600
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G63110 | Predictedtwo hybrid | FSW = 0.0223
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.5727
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT1G20760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3505
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT4G36860 | PredictedAffinity Capture-MS | FSW = 0.5479
| Unknown | ZINC ION BINDING |
AT5G22780 | PredictedAffinity Capture-MS | FSW = 0.0475
| Unknown | ADAPTIN FAMILY PROTEIN |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.4379
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT4G35310 | PredictedAffinity Capture-MS | FSW = 0.2679
| Unknown | CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G35690 | PredictedAffinity Capture-MS | FSW = 0.4043
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT4G26600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1916
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT5G59870 | PredictedAffinity Capture-MS | FSW = 0.5385
| Unknown | HTA6 DNA BINDING |
AT2G23930 | PredictedAffinity Capture-MS | FSW = 0.0214
| Unknown | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.4633
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.4545
| Unknown | HISTONE H2B PUTATIVE |
AT3G20970 | PredictedAffinity Capture-MS | FSW = 0.0869
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3417
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.4321
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.4783
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.5186
| Unknown | BINDING |
AT4G25780 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2679
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.6455
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.5849
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT2G24040 | PredictedAffinity Capture-MS | FSW = 0.5988
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT4G10920 | PredictedAffinity Capture-MS | FSW = 0.0721
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.6907
| Unknown | PSF2 |
AT4G29430 | PredictedAffinity Capture-MS | FSW = 0.1217
| Unknown | RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G47880 | PredictedAffinity Capture-MS | FSW = 0.4638
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
AT1G05910 | PredictedAffinity Capture-MS | FSW = 0.1059
| Unknown | CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.2491
| Unknown | UNKNOWN PROTEIN |
AT2G37540 | PredictedAffinity Capture-MS | FSW = 0.2269
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.4468
| Unknown | ATATG18A |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.3981
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT1G05785 | PredictedAffinity Capture-MS | FSW = 0.1243
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT1G11530 | PredictedAffinity Capture-MS | FSW = 0.4785
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.4384
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.4696
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.5711
| Unknown | UNKNOWN PROTEIN |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.5575
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.5848
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G63370 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0875
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.5709
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.5426
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G76720 | PredictedAffinity Capture-MS | FSW = 0.5213
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT1G79210 | PredictedAffinity Capture-MS | FSW = 0.1085
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.2604
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G03667 | PredictedAffinity Capture-MS | FSW = 0.4104
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT2G16090 | PredictedAffinity Capture-MS | FSW = 0.2268
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.3351
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.3529
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.4255
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G29390 | PredictedAffinity Capture-MS | FSW = 0.3855
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.1899
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.5196
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G02000 | PredictedAffinity Capture-MS | FSW = 0.0544
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.5134
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.5672
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G18660 | PredictedAffinity Capture-MS | FSW = 0.0349
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.4923
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.4213
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.6349
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.4376
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.6213
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G53880 | PredictedCo-purification | FSW = 0.0633
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G57550 | PredictedAffinity Capture-MS | FSW = 0.1797
| Unknown | AGK2 (GUANYLATE KINASE) GUANYLATE KINASE |
AT3G63150 | PredictedAffinity Capture-Western | FSW = 0.0034
| Unknown | MIRO2 (MIRO-RELATED GTP-ASE 2) GTPASE/ CALCIUM ION BINDING |
AT4G11330 | PredictedAffinity Capture-MS | FSW = 0.1470
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT4G17770 | PredictedAffinity Capture-MS | FSW = 0.5261
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G33200 | PredictedAffinity Capture-MS | FSW = 0.0225
| Unknown | XI-I MOTOR/ PROTEIN BINDING |
AT4G35620 | PredictedAffinity Capture-MS | FSW = 0.1081
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT4G36800 | PredictedAffinity Capture-MS | FSW = 0.2645
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
AT5G02560 | PredictedAffinity Capture-MS | FSW = 0.0884
| Unknown | HTA12 DNA BINDING |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.2693
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G09390 | PredictedAffinity Capture-MS | FSW = 0.3206
| Unknown | CD2-BINDING PROTEIN-RELATED |
AT5G09630 | PredictedAffinity Capture-MS | FSW = 0.4880
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G19660 | PredictedAffinity Capture-MS | FSW = 0.4665
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.4186
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G37850 | PredictedAffinity Capture-MS | FSW = 0.2308
| Unknown | SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.5535
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4304
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G54200 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5122
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.2094
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT5G67380 | PredictedAffinity Capture-MS | FSW = 0.2485
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT3G51130 | Predictedtwo hybrid | FSW = 0.0139
| Unknown | UNKNOWN PROTEIN |
AT4G37980 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1283
| Unknown | ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT3G19450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0960
| Unknown | ATCAD4 CINNAMYL-ALCOHOL DEHYDROGENASE |
AT4G37970 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1087
| Unknown | CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT4G37990 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1091
| Unknown | ELI3-2 (ELICITOR-ACTIVATED GENE 3-2) ARYL-ALCOHOL DEHYDROGENASE/ MANNITOL DEHYDROGENASE |
AT1G72680 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0555
| Unknown | CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE |
AT2G21730 | PredictedPhylogenetic profile method | FSW = 0.0889
| Unknown | CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT2G21890 | PredictedPhylogenetic profile method | FSW = 0.0632
| Unknown | CAD3 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 3) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454