Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G11890 - ( SEC22 transporter )

132 Proteins interacs with AT1G11890
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G66680

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0543

Class C:

plasma membrane

endoplasmic reticulum

DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE
AT1G02130

Predicted

Synthetic Lethality

Reconstituted Complex

Phenotypic Suppression

interologs mapping

interologs mapping

Synthetic Rescue

interaction prediction

FSW = 0.0494

Class C:

plasma membrane

endoplasmic reticulum

ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING
AT5G23630

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.2860

Class C:

plasma membrane

endoplasmic reticulum

ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT1G07670

Predicted

Phenotypic Enhancement

FSW = 0.1140

Class C:

plasma membrane

endoplasmic reticulum

CALCIUM-TRANSPORTING ATPASE
AT3G08580

Predicted

two hybrid

FSW = 0.0334

Class C:

plasma membrane

AAC1 (ADP/ATP CARRIER 1) ATPADP ANTIPORTER/ BINDING
AT1G78900

Predicted

Phenotypic Enhancement

FSW = 0.0256

Class C:

plasma membrane

VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G56190

Predicted

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

interaction prediction

FSW = 0.0430

Class C:

plasma membrane

ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT3G12110

Predicted

Phenotypic Enhancement

FSW = 0.0471

Class C:

plasma membrane

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G52640

Predicted

Synthetic Lethality

FSW = 0.0491

Class C:

plasma membrane

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G62020

Predicted

Affinity Capture-Western

interaction prediction

FSW = 0.0764

Class C:

plasma membrane

COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE
AT1G56330

Predicted

interaction prediction

Affinity Capture-Western

Affinity Capture-Western

Co-purification

interologs mapping

FSW = 0.0736

Class C:

plasma membrane

ATSAR1B (SECRETION-ASSOCIATED RAS 1 B) GTP BINDING
AT3G07180

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0538

Class C:

endoplasmic reticulum

GPI TRANSAMIDASE COMPONENT PIG-S-RELATED
AT4G01320

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0479

Class C:

endoplasmic reticulum

ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE
AT3G07100

Predicted

Affinity Capture-Western

fluorescence acceptor donor pair

fluorescence acceptor donor pair

interologs mapping

interaction prediction

FSW = 0.0503

Class C:

endoplasmic reticulum

PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE
AT2G17520

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1299

Class C:

endoplasmic reticulum

IRE1A ENDORIBONUCLEASE/ KINASE
AT1G10130

Predicted

interologs mapping

FSW = 0.0720

Class C:

endoplasmic reticulum

ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE
AT1G22200

Predicted

Phenotypic Enhancement

FSW = 0.0691

Class C:

endoplasmic reticulum

UNKNOWN PROTEIN
AT1G18260

Predicted

interologs mapping

FSW = 0.0874

Class C:

endoplasmic reticulum

SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED
AT1G51740

Predicted

Affinity Capture-Western

Affinity Capture-Western

interologs mapping

interaction prediction

FSW = 0.0493

Class C:

endoplasmic reticulum

SYP81 (SYNTAXIN OF PLANTS 81) SNAP RECEPTOR/ PROTEIN BINDING
AT1G01020

Predicted

Phenotypic Enhancement

FSW = 0.0532

Class C:

endoplasmic reticulum

ARV1
AT5G13490

Predicted

two hybrid

interaction prediction

FSW = 0.0368

Unknown

AAC2 (ADP/ATP CARRIER 2) ATPADP ANTIPORTER/ BINDING
AT5G41790

Predicted

interologs mapping

interologs mapping

FSW = 0.0308

Unknown

CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING
AT1G31780

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1505

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT1G73430

Predicted

interologs mapping

Affinity Capture-Western

interaction prediction

FSW = 0.1403

Unknown

SEC34-LIKE FAMILY PROTEIN
AT4G31490

Predicted

Affinity Capture-Western

FSW = 0.0845

Unknown

COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE
AT2G45200

Predicted

Reconstituted Complex

Enriched domain pair

Co-expression

FSW = 0.1635

Unknown

GOS12 (GOLGI SNARE 12) SNARE BINDING
AT2G05630

Predicted

interologs mapping

FSW = 0.0314

Unknown

AUTOPHAGY 8D (APG8D)
AT1G62040

Predicted

interologs mapping

FSW = 0.0345

Unknown

ATG8C (AUTOPHAGY 8C) MICROTUBULE BINDING
AT2G25340

Predicted

Reconstituted Complex

FSW = 0.0432

Unknown

ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712)
AT1G30470Predicted

Phenotypic Suppression

FSW = 0.0212

Unknown

SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN
AT1G64790Predicted

Phenotypic Enhancement

FSW = 0.0802

Unknown

BINDING
AT4G04910

Predicted

interologs mapping

Phenotypic Enhancement

Affinity Capture-Western

FSW = 0.1219

Unknown

NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G64330

Predicted

interologs mapping

interologs mapping

FSW = 0.0519

Unknown

MYOSIN HEAVY CHAIN-RELATED
AT2G30710

Predicted

Synthetic Lethality

interologs mapping

Phenotypic Enhancement

interaction prediction

FSW = 0.0907

Unknown

RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT5G58060

Predicted

Synthetic Lethality

Reconstituted Complex

Reconstituted Complex

Synthetic Rescue

interologs mapping

FSW = 0.0764

Unknown

YKT61
AT5G67630

Predicted

Phenotypic Enhancement

FSW = 0.0441

Unknown

DNA HELICASE PUTATIVE
AT5G22330

Predicted

Phenotypic Enhancement

FSW = 0.0523

Unknown

RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING
AT1G18640

Predicted

Phenotypic Enhancement

FSW = 0.0799

Unknown

PSP (3-PHOSPHOSERINE PHOSPHATASE) PHOSPHOSERINE PHOSPHATASE
AT2G45300

Predicted

Phenotypic Enhancement

FSW = 0.0494

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT1G09180

Predicted

Affinity Capture-Western

Affinity Capture-Western

Co-purification

FSW = 0.0845

Unknown

ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1) GTP BINDING
AT5G63110

Predicted

Phenotypic Enhancement

FSW = 0.1698

Unknown

HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT5G67270

Predicted

synthetic growth defect

FSW = 0.1311

Unknown

ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT3G12810

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2866

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G43810

Predicted

Phenotypic Enhancement

FSW = 0.1452

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT2G03870

Predicted

Phenotypic Enhancement

FSW = 0.0868

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G02740

Predicted

Phenotypic Enhancement

FSW = 0.1591

Unknown

CHROMATIN BINDING
AT2G06210

Predicted

Phenotypic Enhancement

FSW = 0.0907

Unknown

ELF8 (EARLY FLOWERING 8) BINDING
AT1G03190

Predicted

Phenotypic Enhancement

FSW = 0.1041

Unknown

UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT1G07370

Predicted

Phenotypic Enhancement

FSW = 0.0972

Unknown

PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT2G27470

Predicted

Phenotypic Enhancement

FSW = 0.0904

Unknown

NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR
AT2G38560

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1978

Unknown

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT2G18760

Predicted

Synthetic Lethality

FSW = 0.0296

Unknown

CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G36740

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.3220

Unknown

SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT2G44950

Predicted

Phenotypic Enhancement

FSW = 0.2013

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G13560

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0115

Unknown

AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS
AT1G75510

Predicted

Phenotypic Enhancement

FSW = 0.1124

Unknown

TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN
AT3G24350

Predicted

interaction prediction

Synthetic Lethality

Reconstituted Complex

Reconstituted Complex

Reconstituted Complex

Reconstituted Complex

Co-purification

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Synthetic Rescue

interologs mapping

Enriched domain pair

Co-expression

FSW = 0.1759

Unknown

SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR
AT1G04980

Predicted

Phenotypic Enhancement

FSW = 0.0156

Unknown

ATPDIL2-2 (PDI-LIKE 2-2) PROTEIN DISULFIDE ISOMERASE
AT3G47690

Predicted

synthetic growth defect

FSW = 0.0841

Unknown

ATEB1A MICROTUBULE BINDING
AT5G19910

Predicted

Phenotypic Enhancement

FSW = 0.2367

Unknown

SOH1 FAMILY PROTEIN
AT5G57450

Predicted

interaction prediction

two hybrid

FSW = 0.0856

Unknown

XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT2G31300

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0585

Unknown

ARPC1B (ACTIN-RELATED PROTEIN C1B) ACTIN BINDING / NUCLEOTIDE BINDING
AT2G30910

Predicted

Synthetic Lethality

FSW = 0.0412

Unknown

ARPC1A (ACTIN-RELATED PROTEIN C1A) ACTIN BINDING / NUCLEOTIDE BINDING
AT3G07880

Predicted

Phenotypic Enhancement

FSW = 0.0305

Unknown

RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN
AT2G36200

Predicted

Synthetic Lethality

FSW = 0.0579

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT1G01910

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1226

Unknown

ANION-TRANSPORTING ATPASE PUTATIVE
AT1G05785

Predicted

Phenotypic Enhancement

FSW = 0.0363

Unknown

GOT1-LIKE FAMILY PROTEIN
AT1G05910

Predicted

Phenotypic Enhancement

FSW = 0.0742

Unknown

CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED
AT1G18830Predicted

co-fractionation

Co-fractionation

co-fractionation

Co-fractionation

FSW = 0.0318

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G32130

Predicted

Phenotypic Enhancement

FSW = 0.0747

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G54140

Predicted

Phenotypic Suppression

FSW = 0.1106

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G59890

Predicted

Phenotypic Enhancement

FSW = 0.2600

Unknown

SNL5 (SIN3-LIKE 5)
AT1G73570

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0557

Unknown

SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED
AT1G79990

Predicted

interologs mapping

Affinity Capture-Western

interaction prediction

FSW = 0.1359

Unknown

LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK)
AT2G17980

Predicted

Synthetic Rescue

Synthetic Lethality

Reconstituted Complex

Phenotypic Suppression

Affinity Capture-Western

interologs mapping

interaction prediction

FSW = 0.1606

Unknown

ATSLY1 PROTEIN TRANSPORTER
AT2G22530

Predicted

Phenotypic Enhancement

FSW = 0.0950

Unknown

CATALYTIC/ TRANSFERASE
AT2G23070

Predicted

Phenotypic Suppression

FSW = 0.0617

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G34770

Predicted

interologs mapping

Phenotypic Enhancement

Co-expression

FSW = 0.1518

Unknown

FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE
AT2G44150

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

interaction prediction

FSW = 0.2073

Unknown

ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT3G02820

Predicted

Phenotypic Enhancement

FSW = 0.0720

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G12180

Predicted

Phenotypic Enhancement

FSW = 0.1937

Unknown

CORNICHON FAMILY PROTEIN
AT3G18520

Predicted

Phenotypic Enhancement

FSW = 0.1011

Unknown

HDA15 HISTONE DEACETYLASE
AT3G20800

Predicted

Phenotypic Enhancement

FSW = 0.0646

Unknown

RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE
AT3G22142

Predicted

Phenotypic Enhancement

FSW = 0.1610

Unknown

STRUCTURAL CONSTITUENT OF CELL WALL
AT3G22480

Predicted

interologs mapping

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.1989

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G22590

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

interaction prediction

FSW = 0.2177

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G25100

Predicted

Synthetic Lethality

FSW = 0.0803

Unknown

CDC45 (CELL DIVISION CYCLE 45)
AT3G42660

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.1676

Unknown

NUCLEOTIDE BINDING
AT4G14160

Predicted

Phenotypic Suppression

Affinity Capture-Western

fluorescence acceptor donor pair

fluorescence acceptor donor pair

interologs mapping

interaction prediction

FSW = 0.1026

Unknown

TRANSPORT PROTEIN PUTATIVE
AT4G17890

Predicted

interologs mapping

FSW = 0.1511

Unknown

AGD8 (ARF-GAP DOMAIN 8) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT4G34450

Predicted

co-fractionation

Co-fractionation

Affinity Capture-Western

co-fractionation

interologs mapping

Affinity Capture-Western

Synthetic Rescue

interaction prediction

FSW = 0.1362

Unknown

COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE
AT5G13680

Predicted

Phenotypic Enhancement

FSW = 0.1028

Unknown

ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT5G22840

Predicted

Phenotypic Enhancement

FSW = 0.0108

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G27970Predicted

interologs mapping

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.1494

Unknown

BINDING
AT5G42000

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.1898

Unknown

ORMDL FAMILY PROTEIN
AT5G45600

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.2378

Unknown

GAS41 PROTEIN BINDING
AT5G50320

Predicted

Phenotypic Enhancement

FSW = 0.1232

Unknown

ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G52210

Predicted

interologs mapping

Phenotypic Suppression

FSW = 0.0902

Unknown

ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING
AT5G54750

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0750

Unknown

TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE
AT5G55310

Predicted

Phenotypic Suppression

FSW = 0.0742

Unknown

TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I
AT5G59440

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0058

Unknown

ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE
AT5G61150

Predicted

Phenotypic Enhancement

FSW = 0.2224

Unknown

VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT5G63610

Predicted

Phenotypic Suppression

FSW = 0.0687

Unknown

CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G49540

Predicted

Phenotypic Enhancement

FSW = 0.1219

Unknown

NUCLEOTIDE BINDING
AT1G61040

Predicted

Phenotypic Enhancement

FSW = 0.1452

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G66740

Predicted

Phenotypic Enhancement

FSW = 0.1138

Unknown

SGA2
AT1G79730

Predicted

Phenotypic Enhancement

FSW = 0.1398

Unknown

ELF7 (EARLY FLOWERING 7)
AT2G02760

Predicted

Phenotypic Enhancement

FSW = 0.1497

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G27970

Predicted

Phenotypic Enhancement

FSW = 0.0330

Unknown

CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT3G01090

Predicted

Phenotypic Enhancement

FSW = 0.0525

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G05000

Predicted

interologs mapping

Phenotypic Suppression

FSW = 0.0350

Unknown

TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN
AT3G18860

Predicted

Phenotypic Suppression

FSW = 0.1837

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G21060

Predicted

Phenotypic Enhancement

FSW = 0.1752

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G54380

Predicted

Phenotypic Enhancement

FSW = 0.1330

Unknown

SAC3/GANP FAMILY PROTEIN
AT4G22140

Predicted

Phenotypic Enhancement

FSW = 0.1022

Unknown

DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G33240

Predicted

Phenotypic Enhancement

FSW = 0.1301

Unknown

1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT5G05010

Predicted

Affinity Capture-Western

interaction prediction

FSW = 0.0989

Unknown

CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT-RELATED
AT5G13780

Predicted

Phenotypic Enhancement

FSW = 0.1132

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G41880

Predicted

Phenotypic Enhancement

FSW = 0.0747

Unknown

POLA3 DNA PRIMASE
AT5G46030

Predicted

Phenotypic Enhancement

FSW = 0.1086

Unknown

UNKNOWN PROTEIN
AT5G65180

Predicted

Phenotypic Suppression

FSW = 0.1584

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK)
AT5G67320

Predicted

Phenotypic Enhancement

FSW = 0.1067

Unknown

HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15)
AT4G31480

Predicted

Affinity Capture-Western

interaction prediction

FSW = 0.0756

Unknown

COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE
AT1G52360

Predicted

Affinity Capture-Western

interologs mapping

FSW = 0.0933

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE
AT1G05520

Predicted

Affinity Capture-Western

fluorescence acceptor donor pair

fluorescence acceptor donor pair

Phenotypic Suppression

FSW = 0.0969

Unknown

TRANSPORT PROTEIN PUTATIVE
AT3G44340

Predicted

Affinity Capture-Western

fluorescence acceptor donor pair

fluorescence acceptor donor pair

FSW = 0.1218

Unknown

CEF (CLONE EIGHTY-FOUR) PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT2G35210

Predicted

interologs mapping

FSW = 0.1286

Unknown

RPA (ROOT AND POLLEN ARFGAP) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT1G51160

Predicted

interologs mapping

interaction prediction

FSW = 0.1216

Unknown

SYNBINDIN PUTATIVE
AT3G03180

Predicted

interologs mapping

FSW = 0.0500

Unknown

GOT1-LIKE FAMILY PROTEIN
AT1G12340

Predicted

interologs mapping

FSW = 0.1589

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK)
AT2G18000

Predicted

Synthetic Lethality

FSW = 0.1218

Unknown

TAF14 (TBP-ASSOCIATED FACTOR 14)
AT1G60970

Predicted

interaction prediction

FSW = 0.0848

Unknown

CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454