Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G27970 - ( NTF2B (NUCLEAR TRANSPORT FACTOR 2B) Ran GTPase binding / protein transporter )
125 Proteins interacs with AT1G27970Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G20010 | Experimentaltwo hybrid | FSW = 0.0657
| Class A:plasma membranenucleusClass B:peroxisomeClass D:cytosol (p = 0.67) | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
YLR293C | Experimentaltwo hybrid | FSW = 0.0465
| Unknown | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
ETG5901 | Experimentaltwo hybrid | FSW = 0.0465
| Unknown | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.4495
| Class C:plasma membranenucleus | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G45420 | PredictedAffinity Capture-MS | FSW = 0.4536
| Class C:plasma membranenucleus | MYB FAMILY TRANSCRIPTION FACTOR |
AT5G23740 | PredictedAffinity Capture-MS | FSW = 0.4844
| Class C:plasma membranenucleus | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G75840 | PredictedAffinity Capture-MS | FSW = 0.2324
| Class C:plasma membranenucleus | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.2240
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.5638
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.4913
| Class C:plasma membrane | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.5922
| Class C:plasma membrane | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3701
| Class C:plasma membrane | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT5G12350 | PredictedAffinity Capture-MS | FSW = 0.1139
| Class C:plasma membrane | RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING |
AT4G36860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.6185
| Class C:plasma membrane | ZINC ION BINDING |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.6308
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.4327
| Class C:plasma membrane | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.5155
| Class C:plasma membrane | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G22120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3820
| Class C:plasma membrane | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT1G13320 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2403
| Class C:plasma membrane | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.4984
| Class C:plasma membrane | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.5079
| Class C:nucleus | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G20020 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridin vivoin vivoin vivoin vivoin vivoin vitroin vitroin vitroin vitroin vitroAffinity Capture-MStwo hybridEnriched domain pair | FSW = 0.0624
| Class C:nucleus | RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.5102
| Class C:nucleus | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT1G27310 | PredictedShared biological functionGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0708
| Class C:nucleus | NTF2A (NUCLEAR TRANSPORT FACTOR 2A) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.5662
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT5G59870 | PredictedAffinity Capture-MS | FSW = 0.5264
| Class C:nucleus | HTA6 DNA BINDING |
AT1G11570 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0569
| Class C:nucleus | NUCLEAR TRANSPORT FACTOR 2 (NTF2) PUTATIVE |
AT1G24310 | Predictedin vivo | FSW = 0.0162
| Class C:nucleus | UNKNOWN PROTEIN |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.5147
| Class C:nucleus | HISTONE H2B PUTATIVE |
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.5883
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0393
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G24780 | PredictedAffinity Capture-MS | FSW = 0.2715
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT2G29990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3415
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT3G08950 | PredictedAffinity Capture-MS | FSW = 0.4932
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.5939
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.4634
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.2984
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT2G39290 | PredictedAffinity Capture-MS | FSW = 0.0554
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT2G31170 | PredictedAffinity Capture-MS | FSW = 0.2449
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4001
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT5G13050 | PredictedAffinity Capture-MS | FSW = 0.5037
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT1G51040 | PredictedAffinity Capture-MS | FSW = 0.1725
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.3330
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT4G23430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2579
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT4G00520 | PredictedAffinity Capture-MS | FSW = 0.0500
| Unknown | ACYL-COA THIOESTERASE FAMILY PROTEIN |
AT2G35690 | PredictedAffinity Capture-MS | FSW = 0.4272
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT1G70580 | PredictedAffinity Capture-MS | FSW = 0.0727
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT3G20970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1158
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT3G10920 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3142
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.4177
| Unknown | BINDING |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.5377
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT2G13650 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.5386
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT4G33710 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2050
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G25780 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2281
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G08730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2205
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G16050 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4808
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.4723
| Unknown | PSF2 |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.5133
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.4824
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT3G22880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1495
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G47880 | PredictedAffinity Capture-MS | FSW = 0.4405
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
AT2G24040 | PredictedAffinity Capture-MS | FSW = 0.5415
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT5G55190 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridin vitroin vitroin vitroin vitroin vitroin vivoin vivoin vivoin vivoin vivoAffinity Capture-MStwo hybridReconstituted Complex | FSW = 0.0238
| Unknown | RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING |
AT2G45000 | Predictedin vitroin vitro | FSW = 0.0075
| Unknown | EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.4984
| Unknown | UNKNOWN PROTEIN |
AT1G03020 | Predictedsynthetic growth defectAffinity Capture-MS | FSW = 0.0121
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT1G11530 | PredictedAffinity Capture-MS | FSW = 0.4665
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.4589
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.3221
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.0616
| Unknown | UNKNOWN PROTEIN |
AT1G33090 | PredictedAffinity Capture-MS | FSW = 0.1366
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.4034
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.6536
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G76720 | PredictedAffinity Capture-MS | FSW = 0.4687
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT1G78970 | PredictedAffinity Capture-MS | FSW = 0.1699
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT2G01770 | PredictedAffinity Capture-MS | FSW = 0.2913
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G03410 | PredictedAffinity Capture-MS | FSW = 0.1765
| Unknown | MO25 FAMILY PROTEIN |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.2648
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.3439
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G41530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4923
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G47760 | PredictedAffinity Capture-MS | FSW = 0.0879
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.4583
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G11900 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3556
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.5885
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G16840 | PredictedAffinity Capture-MS | FSW = 0.0138
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.5018
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.5389
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.4330
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.6246
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G51880 | PredictedAffinity Capture-MS | FSW = 0.3168
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.4374
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G53510 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3309
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3375
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G16370 | PredictedAffinity Capture-MS | FSW = 0.0069
| Unknown | ATOPT3 (OLIGOPEPTIDE TRANSPORTER) OLIGOPEPTIDE TRANSPORTER |
AT4G17770 | PredictedAffinity Capture-MS | FSW = 0.4800
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G19645 | PredictedAffinity Capture-MS | FSW = 0.2382
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G26810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3036
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT4G33070 | PredictedAffinity Capture-MS | FSW = 0.0778
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT4G35620 | PredictedAffinity Capture-MS | FSW = 0.3182
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G09630 | PredictedAffinity Capture-MS | FSW = 0.5566
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G11920 | Predictedsynthetic growth defectAffinity Capture-Western | FSW = 0.0224
| Unknown | ATCWINV6 (6-&1-FRUCTAN EXOHYDROLASE) HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / INULINASE/ LEVANASE |
AT5G19150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3441
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G19660 | PredictedAffinity Capture-MS | FSW = 0.4665
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT5G20060 | PredictedAffinity Capture-MS | FSW = 0.2747
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
AT5G27640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3176
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.4118
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.4090
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.6223
| Unknown | UNKNOWN PROTEIN |
AT1G58520 | PredictedAffinity Capture-MS | FSW = 0.3180
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.5428
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.5027
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G03667 | PredictedAffinity Capture-MS | FSW = 0.4981
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.3138
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.5027
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.4786
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.6764
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G53730 | PredictedAffinity Capture-MS | FSW = 0.3505
| Unknown | HISTONE H4 |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.4374
| Unknown | ATATG18A |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.5302
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.5008
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.6189
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G24670 | PredictedAffinity Capture-MS | FSW = 0.0555
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.3142
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G57330 | PredictedAffinity Capture-MS | FSW = 0.1217
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
AT1G74150 | Predictedtwo hybrid | FSW = 0.0305
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 14 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GALACTOSE OXIDASE/KELCH BETA-PROPELLER (INTERPROIPR011043) KELCH REPEAT TYPE 1 (INTERPROIPR006652) KELCH REPEAT TYPE 2 (INTERPROIPR011498) KELCH-TYPE BETA PROPELLER (INTERPROIPR015915) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G186101) HAS 8525 BLAST HITS TO 4249 PROTEINS IN 295 SPECIES ARCHAE - 10 BACTERIA - 313 METAZOA - 3989 FUNGI - 859 PLANTS - 1220 VIRUSES - 19 OTHER EUKARYOTES - 2115 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454