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AT1G27970 - ( NTF2B (NUCLEAR TRANSPORT FACTOR 2B) Ran GTPase binding / protein transporter )

125 Proteins interacs with AT1G27970

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G20010	Experimental two hybrid	FSW = 0.0657	Class A: plasma membrane nucleus Class B: peroxisome Class D: cytosol (p = 0.67)	RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING
YLR293C	Experimental two hybrid	FSW = 0.0465	Unknown	RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING
ETG5901	Experimental two hybrid	FSW = 0.0465	Unknown	RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G60390	Predicted Affinity Capture-MS	FSW = 0.4495	Class C: plasma membrane nucleus	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT5G45420	Predicted Affinity Capture-MS	FSW = 0.4536	Class C: plasma membrane nucleus	MYB FAMILY TRANSCRIPTION FACTOR
AT5G23740	Predicted Affinity Capture-MS	FSW = 0.4844	Class C: plasma membrane nucleus	RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G75840	Predicted Affinity Capture-MS	FSW = 0.2324	Class C: plasma membrane nucleus	ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE
AT2G01250	Predicted Affinity Capture-MS	FSW = 0.2240	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L7 (RPL7B)
AT2G20450	Predicted Affinity Capture-MS	FSW = 0.5638	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT1G22780	Predicted Affinity Capture-MS	FSW = 0.4913	Class C: plasma membrane	PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G15210	Predicted Affinity Capture-MS	FSW = 0.5922	Class C: plasma membrane	PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT2G21540	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3701	Class C: plasma membrane	SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER
AT5G12350	Predicted Affinity Capture-MS	FSW = 0.1139	Class C: plasma membrane	RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING
AT4G36860	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.6185	Class C: plasma membrane	ZINC ION BINDING
AT5G62300	Predicted Affinity Capture-MS	FSW = 0.6308	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT4G24400	Predicted Affinity Capture-MS	FSW = 0.4327	Class C: plasma membrane	CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT5G43370	Predicted Affinity Capture-MS	FSW = 0.5155	Class C: plasma membrane	APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT4G22120	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3820	Class C: plasma membrane	EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT1G13320	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2403	Class C: plasma membrane	PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT1G09640	Predicted Affinity Capture-MS	FSW = 0.4984	Class C: plasma membrane	ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT1G07930	Predicted Affinity Capture-MS	FSW = 0.5079	Class C: nucleus	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT5G20020	Predicted two hybrid two hybrid two hybrid two hybrid in vivo in vivo in vivo in vivo in vivo in vitro in vitro in vitro in vitro in vitro Affinity Capture-MS two hybrid Enriched domain pair	FSW = 0.0624	Class C: nucleus	RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING
AT3G16950	Predicted Affinity Capture-MS	FSW = 0.5102	Class C: nucleus	LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE
AT1G27310	Predicted Shared biological function Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.0708	Class C: nucleus	NTF2A (NUCLEAR TRANSPORT FACTOR 2A) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT5G44500	Predicted Affinity Capture-MS	FSW = 0.5662	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT5G59870	Predicted Affinity Capture-MS	FSW = 0.5264	Class C: nucleus	HTA6 DNA BINDING
AT1G11570	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.0569	Class C: nucleus	NUCLEAR TRANSPORT FACTOR 2 (NTF2) PUTATIVE
AT1G24310	Predicted in vivo	FSW = 0.0162	Class C: nucleus	UNKNOWN PROTEIN
AT2G37470	Predicted Affinity Capture-MS	FSW = 0.5147	Class C: nucleus	HISTONE H2B PUTATIVE
AT4G32470	Predicted Affinity Capture-MS	FSW = 0.5883	Unknown	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE
AT3G62870	Predicted synthetic growth defect	FSW = 0.0393	Unknown	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G24780	Predicted Affinity Capture-MS	FSW = 0.2715	Unknown	VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING
AT2G29990	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3415	Unknown	NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE
AT3G08950	Predicted Affinity Capture-MS	FSW = 0.4932	Unknown	ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN
AT2G19860	Predicted Affinity Capture-MS	FSW = 0.5939	Unknown	HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G19980	Predicted Affinity Capture-MS	FSW = 0.4634	Unknown	ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G24400	Predicted Affinity Capture-MS	FSW = 0.2984	Unknown	EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC
AT2G39290	Predicted Affinity Capture-MS	FSW = 0.0554	Unknown	PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE
AT2G31170	Predicted Affinity Capture-MS	FSW = 0.2449	Unknown	SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT4G26970	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.4001	Unknown	ACONITATE HYDRATASE/ COPPER ION BINDING
AT5G13050	Predicted Affinity Capture-MS	FSW = 0.5037	Unknown	5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE
AT1G51040	Predicted Affinity Capture-MS	FSW = 0.1725	Unknown	PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE
AT3G11630	Predicted Affinity Capture-MS	FSW = 0.3330	Unknown	2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT4G23430	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2579	Unknown	SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT4G00520	Predicted Affinity Capture-MS	FSW = 0.0500	Unknown	ACYL-COA THIOESTERASE FAMILY PROTEIN
AT2G35690	Predicted Affinity Capture-MS	FSW = 0.4272	Unknown	ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS
AT1G70580	Predicted Affinity Capture-MS	FSW = 0.0727	Unknown	AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE
AT3G20970	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1158	Unknown	NFU4 STRUCTURAL MOLECULE
AT3G10920	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3142	Unknown	MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE
AT4G30990	Predicted Affinity Capture-MS	FSW = 0.4177	Unknown	BINDING
AT1G72480	Predicted Affinity Capture-MS	FSW = 0.5377	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK)
AT2G13650	Predicted Affinity Capture-Western Affinity Capture-MS	FSW = 0.5386	Unknown	GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT4G33710	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2050	Unknown	PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT4G25780	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2281	Unknown	PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT3G08730	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2205	Unknown	PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G16050	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.4808	Unknown	A37 PROTEIN HETERODIMERIZATION
AT3G12530	Predicted Affinity Capture-MS	FSW = 0.4723	Unknown	PSF2
AT3G52580	Predicted Affinity Capture-MS	FSW = 0.5133	Unknown	40S RIBOSOMAL PROTEIN S14 (RPS14C)
AT5G41480	Predicted Affinity Capture-MS	FSW = 0.4824	Unknown	GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE
AT3G22880	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1495	Unknown	DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G47880	Predicted Affinity Capture-MS	FSW = 0.4405	Unknown	ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR
AT2G24040	Predicted Affinity Capture-MS	FSW = 0.5415	Unknown	HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE
AT5G55190	Predicted two hybrid two hybrid two hybrid two hybrid in vitro in vitro in vitro in vitro in vitro in vivo in vivo in vivo in vivo in vivo Affinity Capture-MS two hybrid Reconstituted Complex	FSW = 0.0238	Unknown	RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING
AT2G45000	Predicted in vitro in vitro	FSW = 0.0075	Unknown	EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE
AT1G24706	Predicted Affinity Capture-MS	FSW = 0.4984	Unknown	UNKNOWN PROTEIN
AT1G03020	Predicted synthetic growth defect Affinity Capture-MS	FSW = 0.0121	Unknown	GLUTAREDOXIN FAMILY PROTEIN
AT1G11530	Predicted Affinity Capture-MS	FSW = 0.4665	Unknown	ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE
AT1G20696	Predicted Affinity Capture-MS	FSW = 0.4589	Unknown	HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G20920	Predicted Affinity Capture-MS	FSW = 0.3221	Unknown	DEAD BOX RNA HELICASE PUTATIVE
AT1G26140	Predicted Affinity Capture-MS	FSW = 0.0616	Unknown	UNKNOWN PROTEIN
AT1G33090	Predicted Affinity Capture-MS	FSW = 0.1366	Unknown	MATE EFFLUX FAMILY PROTEIN
AT1G55730	Predicted Affinity Capture-MS	FSW = 0.4034	Unknown	ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER
AT1G64480	Predicted Affinity Capture-MS	FSW = 0.6536	Unknown	CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING
AT1G76720	Predicted Affinity Capture-MS	FSW = 0.4687	Unknown	GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT1G78970	Predicted Affinity Capture-MS	FSW = 0.1699	Unknown	LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE
AT2G01770	Predicted Affinity Capture-MS	FSW = 0.2913	Unknown	VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER
AT2G03410	Predicted Affinity Capture-MS	FSW = 0.1765	Unknown	MO25 FAMILY PROTEIN
AT2G16740	Predicted Affinity Capture-MS	FSW = 0.2648	Unknown	UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT2G21250	Predicted Affinity Capture-MS	FSW = 0.3439	Unknown	MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE
AT2G41530	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.4923	Unknown	SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS
AT2G47760	Predicted Affinity Capture-MS	FSW = 0.0879	Unknown	ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC
AT3G05960	Predicted Affinity Capture-MS	FSW = 0.4583	Unknown	STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G11900	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3556	Unknown	ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER
AT3G12690	Predicted Affinity Capture-MS	FSW = 0.5885	Unknown	AGC15 (AGC KINASE 15) KINASE
AT3G16840	Predicted Affinity Capture-MS	FSW = 0.0138	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G19940	Predicted Affinity Capture-MS	FSW = 0.5018	Unknown	SUGAR TRANSPORTER PUTATIVE
AT3G20650	Predicted Affinity Capture-MS	FSW = 0.5389	Unknown	MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G23570	Predicted Affinity Capture-MS	FSW = 0.4330	Unknown	DIENELACTONE HYDROLASE FAMILY PROTEIN
AT3G30842	Predicted Affinity Capture-MS	FSW = 0.6246	Unknown	PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G51880	Predicted Affinity Capture-MS	FSW = 0.3168	Unknown	HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT3G52390	Predicted Affinity Capture-MS	FSW = 0.4374	Unknown	TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT3G53510	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3309	Unknown	ABC TRANSPORTER FAMILY PROTEIN
AT3G59410	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3375	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT4G16370	Predicted Affinity Capture-MS	FSW = 0.0069	Unknown	ATOPT3 (OLIGOPEPTIDE TRANSPORTER) OLIGOPEPTIDE TRANSPORTER
AT4G17770	Predicted Affinity Capture-MS	FSW = 0.4800	Unknown	ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT4G19645	Predicted Affinity Capture-MS	FSW = 0.2382	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK)
AT4G26810	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3036	Unknown	SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT4G33070	Predicted Affinity Capture-MS	FSW = 0.0778	Unknown	PYRUVATE DECARBOXYLASE PUTATIVE
AT4G35620	Predicted Affinity Capture-MS	FSW = 0.3182	Unknown	CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G09630	Predicted Affinity Capture-MS	FSW = 0.5566	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT5G11920	Predicted synthetic growth defect Affinity Capture-Western	FSW = 0.0224	Unknown	ATCWINV6 (6-&1-FRUCTAN EXOHYDROLASE) HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / INULINASE/ LEVANASE
AT5G19150	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3441	Unknown	CARBOHYDRATE KINASE FAMILY
AT5G19660	Predicted Affinity Capture-MS	FSW = 0.4665	Unknown	S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE
AT5G20060	Predicted Affinity Capture-MS	FSW = 0.2747	Unknown	PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN
AT5G27640	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3176	Unknown	TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT5G41190	Predicted Affinity Capture-MS	FSW = 0.4118	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G57890	Predicted Affinity Capture-MS	FSW = 0.4090	Unknown	ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G51770	Predicted Affinity Capture-MS	FSW = 0.6223	Unknown	UNKNOWN PROTEIN
AT1G58520	Predicted Affinity Capture-MS	FSW = 0.3180	Unknown	HYDROLASE ACTING ON ESTER BONDS / LIPASE
AT1G62880	Predicted Affinity Capture-MS	FSW = 0.5428	Unknown	CORNICHON FAMILY PROTEIN
AT1G71280	Predicted Affinity Capture-MS	FSW = 0.5027	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT2G03667	Predicted Affinity Capture-MS	FSW = 0.4981	Unknown	ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING)
AT2G17620	Predicted Affinity Capture-MS	FSW = 0.3138	Unknown	CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G19910	Predicted Affinity Capture-MS	FSW = 0.5027	Unknown	RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN
AT2G43360	Predicted Affinity Capture-MS	FSW = 0.4786	Unknown	BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE
AT2G46860	Predicted Affinity Capture-MS	FSW = 0.6764	Unknown	ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT3G53730	Predicted Affinity Capture-MS	FSW = 0.3505	Unknown	HISTONE H4
AT3G62770	Predicted Affinity Capture-MS	FSW = 0.4374	Unknown	ATATG18A
AT4G25860	Predicted Affinity Capture-MS	FSW = 0.5302	Unknown	ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING
AT4G39330	Predicted Affinity Capture-MS	FSW = 0.5008	Unknown	CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT5G19820	Predicted Affinity Capture-MS	FSW = 0.6189	Unknown	EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G24670	Predicted Affinity Capture-MS	FSW = 0.0555	Unknown	CATALYTIC/ HYDROLASE/ ZINC ION BINDING
AT5G54200	Predicted Affinity Capture-MS	FSW = 0.3142	Unknown	WD-40 REPEAT FAMILY PROTEIN
AT5G57330	Predicted Affinity Capture-MS	FSW = 0.1217	Unknown	ALDOSE 1-EPIMERASE FAMILY PROTEIN
AT1G74150	Predicted two hybrid	FSW = 0.0305	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 14 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GALACTOSE OXIDASE/KELCH BETA-PROPELLER (INTERPROIPR011043) KELCH REPEAT TYPE 1 (INTERPROIPR006652) KELCH REPEAT TYPE 2 (INTERPROIPR011498) KELCH-TYPE BETA PROPELLER (INTERPROIPR015915) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G186101) HAS 8525 BLAST HITS TO 4249 PROTEINS IN 295 SPECIES ARCHAE - 10 BACTERIA - 313 METAZOA - 3989 FUNGI - 859 PLANTS - 1220 VIRUSES - 19 OTHER EUKARYOTES - 2115 (SOURCE NCBI BLINK)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT1G27970 - ( NTF2B (NUCLEAR TRANSPORT FACTOR 2B) Ran GTPase binding / protein transporter )

Class A:

Class B:

Class D:

Unknown

Unknown

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown