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AT1G14400 - ( UBC1 (UBIQUITIN CARRIER PROTEIN 1) ubiquitin-protein ligase )

138 Proteins interacs with AT1G14400

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G44950	Experimental two hybrid	FSW = 0.2620	Unknown	HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT3G13550	Experimental Reconstituted Complex in vitro	FSW = 0.1120	Unknown	FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G55250	Experimental	FSW = 0.0257	Unknown	HUB2 (HISTONE MONO-UBIQUITINATION 2) PROTEIN BINDING / ZINC ION BINDING
AT1G55255	Experimental two hybrid	FSW = 0.3626	Unknown	HUB2 (HISTONE MONO-UBIQUITINATION 2) PROTEIN BINDING / ZINC ION BINDING
AT1G56340	Predicted two hybrid	FSW = 0.0077	Unknown	CRT1 (CALRETICULIN 1) CALCIUM ION BINDING / UNFOLDED PROTEIN BINDING
AT1G20260	Predicted synthetic growth defect	FSW = 0.0115	Unknown	HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT4G02620	Predicted synthetic growth defect	FSW = 0.0663	Unknown	VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN
AT1G12840	Predicted synthetic growth defect	FSW = 0.0289	Unknown	DET3 (DE-ETIOLATED 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G58730	Predicted synthetic growth defect	FSW = 0.0466	Unknown	VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD)
AT3G22630	Predicted Affinity Capture-Western	FSW = 0.0667	Unknown	PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G36340	Predicted Phylogenetic profile method	FSW = 0.1756	Unknown	UBC31 (UBIQUITIN-CONJUGATING ENZYME 31) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT2G38020	Predicted synthetic growth defect	FSW = 0.0601	Unknown	VCL1 (VACUOLELESS 1)
AT3G22110	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0367	Unknown	PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G38495	Predicted Synthetic Lethality	FSW = 0.0584	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S YL1 NUCLEAR C-TERMINAL (INTERPROIPR013272) HAS 189 BLAST HITS TO 189 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 80 FUNGI - 83 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 9 (SOURCE NCBI BLINK)
AT1G11870	Predicted synthetic growth defect	FSW = 0.0129	Unknown	SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE
AT4G34620	Predicted synthetic growth defect	FSW = 0.0028	Unknown	SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G16630	Predicted Phenotypic Enhancement	FSW = 0.0371	Unknown	RAD4 DAMAGED DNA BINDING
AT3G11630	Predicted Synthetic Lethality	FSW = 0.1200	Unknown	2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT4G01310	Predicted synthetic growth defect	FSW = 0.0165	Unknown	RIBOSOMAL PROTEIN L5 FAMILY PROTEIN
AT4G01690	Predicted Synthetic Lethality	FSW = 0.1413	Unknown	PPOX PROTOPORPHYRINOGEN OXIDASE
AT2G41670	Predicted Synthetic Lethality	FSW = 0.0262	Unknown	GTP-BINDING FAMILY PROTEIN
AT1G12520	Predicted Synthetic Lethality	FSW = 0.1889	Unknown	ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT4G35800	Predicted Affinity Capture-Western	FSW = 0.0664	Unknown	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G48750	Predicted Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.0246	Unknown	CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT5G23630	Predicted synthetic growth defect	FSW = 0.0203	Unknown	ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT3G51460	Predicted synthetic growth defect	FSW = 0.0463	Unknown	RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE
AT1G79530	Predicted two hybrid	FSW = 0.0035	Unknown	GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT2G30110	Predicted Affinity Capture-MS	FSW = 0.0305	Unknown	ATUBA1 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE
AT1G16890	Predicted two hybrid	FSW = 0.1901	Unknown	UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT1G64230	Predicted Phenotypic Enhancement Phenotypic Enhancement Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.1905	Unknown	UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT5G19990	Predicted Synthetic Lethality	FSW = 0.0359	Unknown	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT2G06050	Predicted two hybrid	FSW = 0.0074	Unknown	OPR3 (OPDA-REDUCTASE 3) 12-OXOPHYTODIENOATE REDUCTASE
AT2G15240	Predicted Synthetic Lethality	FSW = 0.0316	Unknown	UNC-50 FAMILY PROTEIN
AT4G05190	Predicted Synthetic Lethality	FSW = 0.1270	Unknown	ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR
AT3G12810	Predicted Synthetic Lethality Synthetic Lethality synthetic growth defect Synthetic Lethality	FSW = 0.1130	Unknown	PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G16980	Predicted Synthetic Lethality	FSW = 0.0556	Unknown	NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT1G03190	Predicted Phenotypic Enhancement	FSW = 0.0781	Unknown	UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT1G06960	Predicted synthetic growth defect	FSW = 0.0158	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE
AT4G38130	Predicted synthetic growth defect Synthetic Rescue	FSW = 0.0764	Unknown	HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING
AT2G26150	Predicted synthetic growth defect	FSW = 0.1059	Unknown	ATHSFA2 DNA BINDING / TRANSCRIPTION FACTOR
AT1G65470	Predicted Phenotypic Enhancement	FSW = 0.1187	Unknown	FAS1 (FASCIATA 1) HISTONE BINDING
AT3G19210	Predicted synthetic growth defect	FSW = 0.2314	Unknown	ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G38560	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1164	Unknown	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT1G07370	Predicted Synthetic Rescue	FSW = 0.1583	Unknown	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT1G07470	Predicted two hybrid	FSW = 0.0118	Unknown	TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE
AT2G04540	Predicted synthetic growth defect	FSW = 0.0155	Unknown	3-OXOACYL-(ACYL-CARRIER-PROTEIN) SYNTHASE II PUTATIVE
AT3G17465	Predicted synthetic growth defect	FSW = 0.0224	Unknown	RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G46320	Predicted Synthetic Lethality	FSW = 0.0155	Unknown	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT2G22290	Predicted synthetic growth defect	FSW = 0.0443	Unknown	ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT1G50500	Predicted synthetic growth defect	FSW = 0.0610	Unknown	HIT1 (HEAT-INTOLERANT 1) TRANSPORTER
AT1G71270	Predicted synthetic growth defect	FSW = 0.0317	Unknown	POK (POKY POLLEN TUBE)
AT2G04750	Predicted Synthetic Lethality	FSW = 0.0268	Unknown	FIMBRIN-LIKE PROTEIN PUTATIVE
AT3G47690	Predicted synthetic growth defect	FSW = 0.2165	Unknown	ATEB1A MICROTUBULE BINDING
AT5G41150	Predicted Phenotypic Enhancement synthetic growth defect	FSW = 0.0710	Unknown	UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT1G13060	Predicted Co-purification	FSW = 0.0538	Unknown	PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G31970	Predicted synthetic growth defect	FSW = 0.2342	Unknown	RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT1G16190	Predicted Phenotypic Enhancement Phenotypic Enhancement synthetic growth defect Enriched domain pair Co-expression	FSW = 0.0928	Unknown	DNA REPAIR PROTEIN RAD23 PUTATIVE
AT5G57450	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.1859	Unknown	XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT3G28030	Predicted Phenotypic Enhancement	FSW = 0.0639	Unknown	UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING
AT5G54260	Predicted synthetic growth defect	FSW = 0.2161	Unknown	MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G36200	Predicted synthetic growth defect	FSW = 0.1157	Unknown	KINESIN MOTOR PROTEIN-RELATED
AT5G20850	Predicted synthetic growth defect	FSW = 0.1819	Unknown	ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT3G54860	Predicted synthetic growth defect	FSW = 0.1270	Unknown	VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE
AT1G08830	Predicted Synthetic Lethality	FSW = 0.1372	Unknown	CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE
AT1G20610	Predicted Phenotypic Enhancement	FSW = 0.0129	Unknown	CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G79730	Predicted Affinity Capture-Western	FSW = 0.1071	Unknown	ELF7 (EARLY FLOWERING 7)
AT1G09200	Predicted biochemical biochemical	FSW = 0.0578	Unknown	HISTONE H3
AT1G19480	Predicted Phenotypic Enhancement	FSW = 0.0397	Unknown	HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN
AT4G15475	Predicted Phenotypic Enhancement	FSW = 0.0327	Unknown	F-BOX FAMILY PROTEIN (FBL4)
AT1G55915	Predicted Phenotypic Enhancement	FSW = 0.0497	Unknown	ZINC ION BINDING
AT3G26680	Predicted Phenotypic Enhancement	FSW = 0.0530	Unknown	SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)
AT1G21710	Predicted Phenotypic Enhancement	FSW = 0.0248	Unknown	OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1) OXIDIZED PURINE BASE LESION DNA N-GLYCOSYLASE
AT1G67500	Predicted Phenotypic Enhancement synthetic growth defect Synthetic Rescue	FSW = 0.0986	Unknown	ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT5G13780	Predicted synthetic growth defect	FSW = 0.2341	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT4G38630	Predicted Synthetic Lethality synthetic growth defect Synthetic Lethality	FSW = 0.1471	Unknown	RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT4G30870	Predicted synthetic growth defect	FSW = 0.1016	Unknown	MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT4G25120	Predicted Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue synthetic growth defect Synthetic Rescue	FSW = 0.2559	Unknown	ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT3G02820	Predicted synthetic growth defect	FSW = 0.1240	Unknown	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT2G44580	Predicted synthetic growth defect Enriched domain pair Co-expression	FSW = 0.2493	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT1G66740	Predicted synthetic growth defect	FSW = 0.2140	Unknown	SGA2
AT1G09000	Predicted synthetic growth defect	FSW = 0.0239	Unknown	ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1) MAP KINASE KINASE KINASE/ KINASE
AT4G11920	Predicted synthetic growth defect	FSW = 0.1324	Unknown	CCS52A2 SIGNAL TRANSDUCER
AT3G24200	Predicted synthetic growth defect	FSW = 0.0259	Unknown	FAD BINDING / MONOOXYGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON PAIRED DONORS WITH INCORPORATION OR REDUCTION OF MOLECULAR OXYGEN NADH OR NADPH AS ONE DONOR AND INCORPORATION OF ONE ATOM OF OXYGEN
AT1G04730	Predicted synthetic growth defect	FSW = 0.1998	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT3G06460	Predicted synthetic growth defect	FSW = 0.0084	Unknown	GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT1G24290	Predicted synthetic growth defect Enriched domain pair Co-expression	FSW = 0.0476	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT5G27970	Predicted synthetic growth defect	FSW = 0.1687	Unknown	BINDING
AT2G28820	Predicted synthetic growth defect	FSW = 0.0160	Unknown	BINDING
AT2G23420	Predicted synthetic growth defect	FSW = 0.2091	Unknown	NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE
AT1G12470	Predicted synthetic growth defect	FSW = 0.0855	Unknown	PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN
AT2G44065	Predicted synthetic growth defect	FSW = 0.0447	Unknown	RIBOSOMAL PROTEIN L2 FAMILY PROTEIN
AT3G26990	Predicted synthetic growth defect	FSW = 0.0302	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 815 BLAST HITS TO 806 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 490 FUNGI - 159 PLANTS - 81 VIRUSES - 1 OTHER EUKARYOTES - 74 (SOURCE NCBI BLINK)
AT1G10450	Predicted synthetic growth defect	FSW = 0.1247	Unknown	SNL6 (SIN3-LIKE 6)
AT3G01090	Predicted synthetic growth defect Enriched domain pair Co-expression	FSW = 0.0347	Unknown	AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G20630	Predicted synthetic growth defect Enriched domain pair Co-expression	FSW = 0.0433	Unknown	UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14) UBIQUITIN-SPECIFIC PROTEASE
AT4G19003	Predicted synthetic growth defect	FSW = 0.0778	Unknown	VPS25
AT5G04920	Predicted synthetic growth defect	FSW = 0.1122	Unknown	VACUOLAR PROTEIN SORTING 36 FAMILY PROTEIN / VPS36 FAMILY PROTEIN
AT5G13680	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1187	Unknown	ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT1G49540	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0907	Unknown	NUCLEOTIDE BINDING
AT5G50320	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0917	Unknown	ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT2G44150	Predicted Synthetic Lethality	FSW = 0.0968	Unknown	ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT1G52740	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality	FSW = 0.1285	Unknown	HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT5G10270	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1907	Unknown	CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT1G51710	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1381	Unknown	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G64750	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0674	Unknown	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))
AT1G50370	Predicted Synthetic Lethality	FSW = 0.0378	Unknown	SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE
AT5G26680	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.2387	Unknown	ENDONUCLEASE PUTATIVE
AT3G58560	Predicted Synthetic Lethality	FSW = 0.1712	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT3G42660	Predicted Synthetic Lethality	FSW = 0.2635	Unknown	NUCLEOTIDE BINDING
AT1G15920	Predicted Synthetic Lethality	FSW = 0.2156	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT1G60430	Predicted Synthetic Lethality	FSW = 0.0458	Unknown	ARPC3 (ACTIN-RELATED PROTEIN C3) STRUCTURAL MOLECULE
AT1G71010	Predicted Synthetic Lethality	FSW = 0.0355	Unknown	PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN
AT1G63660	Predicted Synthetic Lethality	FSW = 0.0041	Unknown	GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE
AT5G40490	Predicted Synthetic Lethality	FSW = 0.1287	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G25610	Predicted Synthetic Lethality	FSW = 0.0195	Unknown	H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN
AT3G09560	Predicted Synthetic Lethality	FSW = 0.0684	Unknown	LIPIN FAMILY PROTEIN
AT2G18000	Predicted Synthetic Lethality	FSW = 0.1485	Unknown	TAF14 (TBP-ASSOCIATED FACTOR 14)
AT3G11450	Predicted Synthetic Lethality	FSW = 0.0169	Unknown	DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED
AT1G54140	Predicted Synthetic Lethality	FSW = 0.0995	Unknown	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT5G08565	Predicted Synthetic Lethality	FSW = 0.0694	Unknown	POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT1G54390	Predicted Synthetic Lethality	FSW = 0.0585	Unknown	PHD FINGER PROTEIN-RELATED
AT3G15080	Predicted two hybrid	FSW = 0.0153	Unknown	EXONUCLEASE FAMILY PROTEIN
AT2G32790	Predicted Phylogenetic profile method Co-expression	FSW = 0.1278	Unknown	UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT2G02760	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.6430	Unknown	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT5G59300	Predicted Phylogenetic profile method Co-expression	FSW = 0.0959	Unknown	UBC7 (UBIQUITIN CARRIER PROTEIN 7) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G45050	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.0757	Unknown	ATUBC2-1 UBIQUITIN-PROTEIN LIGASE
AT5G62540	Predicted Phylogenetic profile method Co-expression	FSW = 0.2236	Unknown	UBC3 (UBIQUITIN-CONJUGATING ENZYME 3) UBIQUITIN-PROTEIN LIGASE
AT3G57870	Predicted Phylogenetic profile method Co-expression	FSW = 0.0454	Unknown	SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE
AT3G08690	Predicted Phylogenetic profile method	FSW = 0.1512	Unknown	UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE
AT4G27960	Predicted Phylogenetic profile method	FSW = 0.1044	Unknown	UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE
AT3G55380	Predicted Phylogenetic profile method	FSW = 0.1287	Unknown	UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE
AT3G08700	Predicted Phylogenetic profile method	FSW = 0.1544	Unknown	UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT5G25760	Predicted Phylogenetic profile method	FSW = 0.2250	Unknown	PEX4 (PEROXIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G46460	Predicted Phylogenetic profile method	FSW = 0.1295	Unknown	UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE
AT5G53300	Predicted Phylogenetic profile method	FSW = 0.1300	Unknown	UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE
AT2G16740	Predicted Phylogenetic profile method	FSW = 0.0481	Unknown	UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT5G56150	Predicted Phylogenetic profile method	FSW = 0.1215	Unknown	UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE
AT5G41700	Predicted Phylogenetic profile method	FSW = 0.1354	Unknown	UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT1G14400 - ( UBC1 (UBIQUITIN CARRIER PROTEIN 1) ubiquitin-protein ligase )

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