Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G14400 - ( UBC1 (UBIQUITIN CARRIER PROTEIN 1) ubiquitin-protein ligase )

138 Proteins interacs with AT1G14400
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G44950

Experimental

two hybrid

FSW = 0.2620

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT3G13550

Experimental

Reconstituted Complex

in vitro

FSW = 0.1120

Unknown

FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G55250

Experimental

FSW = 0.0257

Unknown

HUB2 (HISTONE MONO-UBIQUITINATION 2) PROTEIN BINDING / ZINC ION BINDING
AT1G55255Experimental

two hybrid

FSW = 0.3626

Unknown

HUB2 (HISTONE MONO-UBIQUITINATION 2) PROTEIN BINDING / ZINC ION BINDING
AT1G56340

Predicted

two hybrid

FSW = 0.0077

Unknown

CRT1 (CALRETICULIN 1) CALCIUM ION BINDING / UNFOLDED PROTEIN BINDING
AT1G20260

Predicted

synthetic growth defect

FSW = 0.0115

Unknown

HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT4G02620

Predicted

synthetic growth defect

FSW = 0.0663

Unknown

VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN
AT1G12840

Predicted

synthetic growth defect

FSW = 0.0289

Unknown

DET3 (DE-ETIOLATED 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G58730

Predicted

synthetic growth defect

FSW = 0.0466

Unknown

VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD)
AT3G22630

Predicted

Affinity Capture-Western

FSW = 0.0667

Unknown

PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G36340

Predicted

Phylogenetic profile method

FSW = 0.1756

Unknown

UBC31 (UBIQUITIN-CONJUGATING ENZYME 31) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT2G38020

Predicted

synthetic growth defect

FSW = 0.0601

Unknown

VCL1 (VACUOLELESS 1)
AT3G22110

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0367

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G38495

Predicted

Synthetic Lethality

FSW = 0.0584

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S YL1 NUCLEAR C-TERMINAL (INTERPROIPR013272) HAS 189 BLAST HITS TO 189 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 80 FUNGI - 83 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 9 (SOURCE NCBI BLINK)
AT1G11870

Predicted

synthetic growth defect

FSW = 0.0129

Unknown

SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE
AT4G34620

Predicted

synthetic growth defect

FSW = 0.0028

Unknown

SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G16630

Predicted

Phenotypic Enhancement

FSW = 0.0371

Unknown

RAD4 DAMAGED DNA BINDING
AT3G11630

Predicted

Synthetic Lethality

FSW = 0.1200

Unknown

2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT4G01310

Predicted

synthetic growth defect

FSW = 0.0165

Unknown

RIBOSOMAL PROTEIN L5 FAMILY PROTEIN
AT4G01690

Predicted

Synthetic Lethality

FSW = 0.1413

Unknown

PPOX PROTOPORPHYRINOGEN OXIDASE
AT2G41670

Predicted

Synthetic Lethality

FSW = 0.0262

Unknown

GTP-BINDING FAMILY PROTEIN
AT1G12520

Predicted

Synthetic Lethality

FSW = 0.1889

Unknown

ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT4G35800

Predicted

Affinity Capture-Western

FSW = 0.0664

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G48750

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0246

Unknown

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT5G23630

Predicted

synthetic growth defect

FSW = 0.0203

Unknown

ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT3G51460

Predicted

synthetic growth defect

FSW = 0.0463

Unknown

RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE
AT1G79530

Predicted

two hybrid

FSW = 0.0035

Unknown

GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT2G30110

Predicted

Affinity Capture-MS

FSW = 0.0305

Unknown

ATUBA1 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE
AT1G16890

Predicted

two hybrid

FSW = 0.1901

Unknown

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT1G64230

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1905

Unknown

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT5G19990

Predicted

Synthetic Lethality

FSW = 0.0359

Unknown

RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT2G06050

Predicted

two hybrid

FSW = 0.0074

Unknown

OPR3 (OPDA-REDUCTASE 3) 12-OXOPHYTODIENOATE REDUCTASE
AT2G15240

Predicted

Synthetic Lethality

FSW = 0.0316

Unknown

UNC-50 FAMILY PROTEIN
AT4G05190

Predicted

Synthetic Lethality

FSW = 0.1270

Unknown

ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR
AT3G12810

Predicted

Synthetic Lethality

Synthetic Lethality

synthetic growth defect

Synthetic Lethality

FSW = 0.1130

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G16980

Predicted

Synthetic Lethality

FSW = 0.0556

Unknown

NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT1G03190

Predicted

Phenotypic Enhancement

FSW = 0.0781

Unknown

UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT1G06960

Predicted

synthetic growth defect

FSW = 0.0158

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE
AT4G38130

Predicted

synthetic growth defect

Synthetic Rescue

FSW = 0.0764

Unknown

HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING
AT2G26150

Predicted

synthetic growth defect

FSW = 0.1059

Unknown

ATHSFA2 DNA BINDING / TRANSCRIPTION FACTOR
AT1G65470

Predicted

Phenotypic Enhancement

FSW = 0.1187

Unknown

FAS1 (FASCIATA 1) HISTONE BINDING
AT3G19210

Predicted

synthetic growth defect

FSW = 0.2314

Unknown

ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G38560

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1164

Unknown

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT1G07370

Predicted

Synthetic Rescue

FSW = 0.1583

Unknown

PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT1G07470

Predicted

two hybrid

FSW = 0.0118

Unknown

TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE
AT2G04540

Predicted

synthetic growth defect

FSW = 0.0155

Unknown

3-OXOACYL-(ACYL-CARRIER-PROTEIN) SYNTHASE II PUTATIVE
AT3G17465

Predicted

synthetic growth defect

FSW = 0.0224

Unknown

RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G46320

Predicted

Synthetic Lethality

FSW = 0.0155

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT2G22290

Predicted

synthetic growth defect

FSW = 0.0443

Unknown

ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT1G50500

Predicted

synthetic growth defect

FSW = 0.0610

Unknown

HIT1 (HEAT-INTOLERANT 1) TRANSPORTER
AT1G71270

Predicted

synthetic growth defect

FSW = 0.0317

Unknown

POK (POKY POLLEN TUBE)
AT2G04750

Predicted

Synthetic Lethality

FSW = 0.0268

Unknown

FIMBRIN-LIKE PROTEIN PUTATIVE
AT3G47690

Predicted

synthetic growth defect

FSW = 0.2165

Unknown

ATEB1A MICROTUBULE BINDING
AT5G41150

Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.0710

Unknown

UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT1G13060

Predicted

Co-purification

FSW = 0.0538

Unknown

PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G31970

Predicted

synthetic growth defect

FSW = 0.2342

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT1G16190

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

synthetic growth defect

Enriched domain pair

Co-expression

FSW = 0.0928

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT5G57450

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.1859

Unknown

XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT3G28030

Predicted

Phenotypic Enhancement

FSW = 0.0639

Unknown

UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING
AT5G54260

Predicted

synthetic growth defect

FSW = 0.2161

Unknown

MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G36200

Predicted

synthetic growth defect

FSW = 0.1157

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT5G20850

Predicted

synthetic growth defect

FSW = 0.1819

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT3G54860

Predicted

synthetic growth defect

FSW = 0.1270

Unknown

VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE
AT1G08830

Predicted

Synthetic Lethality

FSW = 0.1372

Unknown

CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE
AT1G20610

Predicted

Phenotypic Enhancement

FSW = 0.0129

Unknown

CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G79730

Predicted

Affinity Capture-Western

FSW = 0.1071

Unknown

ELF7 (EARLY FLOWERING 7)
AT1G09200Predicted

biochemical

biochemical

FSW = 0.0578

Unknown

HISTONE H3
AT1G19480

Predicted

Phenotypic Enhancement

FSW = 0.0397

Unknown

HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN
AT4G15475

Predicted

Phenotypic Enhancement

FSW = 0.0327

Unknown

F-BOX FAMILY PROTEIN (FBL4)
AT1G55915

Predicted

Phenotypic Enhancement

FSW = 0.0497

Unknown

ZINC ION BINDING
AT3G26680

Predicted

Phenotypic Enhancement

FSW = 0.0530

Unknown

SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)
AT1G21710

Predicted

Phenotypic Enhancement

FSW = 0.0248

Unknown

OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1) OXIDIZED PURINE BASE LESION DNA N-GLYCOSYLASE
AT1G67500

Predicted

Phenotypic Enhancement

synthetic growth defect

Synthetic Rescue

FSW = 0.0986

Unknown

ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT5G13780

Predicted

synthetic growth defect

FSW = 0.2341

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT4G38630

Predicted

Synthetic Lethality

synthetic growth defect

Synthetic Lethality

FSW = 0.1471

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT4G30870

Predicted

synthetic growth defect

FSW = 0.1016

Unknown

MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT4G25120Predicted

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

synthetic growth defect

Synthetic Rescue

FSW = 0.2559

Unknown

ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT3G02820

Predicted

synthetic growth defect

FSW = 0.1240

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT2G44580

Predicted

synthetic growth defect

Enriched domain pair

Co-expression

FSW = 0.2493

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT1G66740

Predicted

synthetic growth defect

FSW = 0.2140

Unknown

SGA2
AT1G09000

Predicted

synthetic growth defect

FSW = 0.0239

Unknown

ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1) MAP KINASE KINASE KINASE/ KINASE
AT4G11920

Predicted

synthetic growth defect

FSW = 0.1324

Unknown

CCS52A2 SIGNAL TRANSDUCER
AT3G24200

Predicted

synthetic growth defect

FSW = 0.0259

Unknown

FAD BINDING / MONOOXYGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON PAIRED DONORS WITH INCORPORATION OR REDUCTION OF MOLECULAR OXYGEN NADH OR NADPH AS ONE DONOR AND INCORPORATION OF ONE ATOM OF OXYGEN
AT1G04730Predicted

synthetic growth defect

FSW = 0.1998

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT3G06460

Predicted

synthetic growth defect

FSW = 0.0084

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT1G24290

Predicted

synthetic growth defect

Enriched domain pair

Co-expression

FSW = 0.0476

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT5G27970Predicted

synthetic growth defect

FSW = 0.1687

Unknown

BINDING
AT2G28820Predicted

synthetic growth defect

FSW = 0.0160

Unknown

BINDING
AT2G23420

Predicted

synthetic growth defect

FSW = 0.2091

Unknown

NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE
AT1G12470

Predicted

synthetic growth defect

FSW = 0.0855

Unknown

PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN
AT2G44065

Predicted

synthetic growth defect

FSW = 0.0447

Unknown

RIBOSOMAL PROTEIN L2 FAMILY PROTEIN
AT3G26990

Predicted

synthetic growth defect

FSW = 0.0302

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 815 BLAST HITS TO 806 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 490 FUNGI - 159 PLANTS - 81 VIRUSES - 1 OTHER EUKARYOTES - 74 (SOURCE NCBI BLINK)
AT1G10450

Predicted

synthetic growth defect

FSW = 0.1247

Unknown

SNL6 (SIN3-LIKE 6)
AT3G01090

Predicted

synthetic growth defect

Enriched domain pair

Co-expression

FSW = 0.0347

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G20630

Predicted

synthetic growth defect

Enriched domain pair

Co-expression

FSW = 0.0433

Unknown

UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14) UBIQUITIN-SPECIFIC PROTEASE
AT4G19003

Predicted

synthetic growth defect

FSW = 0.0778

Unknown

VPS25
AT5G04920

Predicted

synthetic growth defect

FSW = 0.1122

Unknown

VACUOLAR PROTEIN SORTING 36 FAMILY PROTEIN / VPS36 FAMILY PROTEIN
AT5G13680

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1187

Unknown

ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT1G49540

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0907

Unknown

NUCLEOTIDE BINDING
AT5G50320

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0917

Unknown

ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT2G44150

Predicted

Synthetic Lethality

FSW = 0.0968

Unknown

ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT1G52740

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

FSW = 0.1285

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT5G10270

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1907

Unknown

CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT1G51710

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1381

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G64750

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0674

Unknown

ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))
AT1G50370

Predicted

Synthetic Lethality

FSW = 0.0378

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE
AT5G26680

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.2387

Unknown

ENDONUCLEASE PUTATIVE
AT3G58560

Predicted

Synthetic Lethality

FSW = 0.1712

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT3G42660

Predicted

Synthetic Lethality

FSW = 0.2635

Unknown

NUCLEOTIDE BINDING
AT1G15920

Predicted

Synthetic Lethality

FSW = 0.2156

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT1G60430

Predicted

Synthetic Lethality

FSW = 0.0458

Unknown

ARPC3 (ACTIN-RELATED PROTEIN C3) STRUCTURAL MOLECULE
AT1G71010

Predicted

Synthetic Lethality

FSW = 0.0355

Unknown

PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN
AT1G63660

Predicted

Synthetic Lethality

FSW = 0.0041

Unknown

GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE
AT5G40490

Predicted

Synthetic Lethality

FSW = 0.1287

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G25610

Predicted

Synthetic Lethality

FSW = 0.0195

Unknown

H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN
AT3G09560

Predicted

Synthetic Lethality

FSW = 0.0684

Unknown

LIPIN FAMILY PROTEIN
AT2G18000

Predicted

Synthetic Lethality

FSW = 0.1485

Unknown

TAF14 (TBP-ASSOCIATED FACTOR 14)
AT3G11450

Predicted

Synthetic Lethality

FSW = 0.0169

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED
AT1G54140

Predicted

Synthetic Lethality

FSW = 0.0995

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT5G08565

Predicted

Synthetic Lethality

FSW = 0.0694

Unknown

POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT1G54390

Predicted

Synthetic Lethality

FSW = 0.0585

Unknown

PHD FINGER PROTEIN-RELATED
AT3G15080

Predicted

two hybrid

FSW = 0.0153

Unknown

EXONUCLEASE FAMILY PROTEIN
AT2G32790

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1278

Unknown

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT2G02760

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.6430

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT5G59300

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0959

Unknown

UBC7 (UBIQUITIN CARRIER PROTEIN 7) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G45050

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0757

Unknown

ATUBC2-1 UBIQUITIN-PROTEIN LIGASE
AT5G62540

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2236

Unknown

UBC3 (UBIQUITIN-CONJUGATING ENZYME 3) UBIQUITIN-PROTEIN LIGASE
AT3G57870

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0454

Unknown

SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE
AT3G08690

Predicted

Phylogenetic profile method

FSW = 0.1512

Unknown

UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE
AT4G27960

Predicted

Phylogenetic profile method

FSW = 0.1044

Unknown

UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE
AT3G55380

Predicted

Phylogenetic profile method

FSW = 0.1287

Unknown

UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE
AT3G08700

Predicted

Phylogenetic profile method

FSW = 0.1544

Unknown

UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT5G25760

Predicted

Phylogenetic profile method

FSW = 0.2250

Unknown

PEX4 (PEROXIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G46460

Predicted

Phylogenetic profile method

FSW = 0.1295

Unknown

UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE
AT5G53300

Predicted

Phylogenetic profile method

FSW = 0.1300

Unknown

UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE
AT2G16740

Predicted

Phylogenetic profile method

FSW = 0.0481

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT5G56150

Predicted

Phylogenetic profile method

FSW = 0.1215

Unknown

UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE
AT5G41700

Predicted

Phylogenetic profile method

FSW = 0.1354

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454