Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G43810 - ( small nuclear ribonucleoprotein F putative / U6 snRNA-associated Sm-like protein putative / Sm protein F putative )
138 Proteins interacs with AT2G43810Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G27090 | PredictedPhenotypic Enhancement | FSW = 0.0717
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L14 (RPL14B) |
AT1G20960 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1772
| Class C:nucleus | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G12780 | PredictedProtein-RNA | FSW = 0.0655
| Class C:nucleus | PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE |
AT1G09760 | PredictedAffinity Capture-MS | FSW = 0.1115
| Class C:nucleus | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
AT1G55920 | PredictedPhenotypic Enhancement | FSW = 0.0350
| Class C:nucleus | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT4G26720 | PredictedPhenotypic Enhancement | FSW = 0.1072
| Class C:nucleus | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G08290 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1969
| Class C:nucleus | YLS8 CATALYTIC |
AT2G44680 | PredictedPhenotypic Enhancement | FSW = 0.1344
| Class C:nucleus | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT5G67270 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1663
| Class C:nucleus | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT1G02680 | PredictedPhenotypic Enhancement | FSW = 0.1107
| Class C:nucleus | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT2G47640 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1200
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT3G12810 | PredictedPhenotypic Enhancement | FSW = 0.2684
| Class C:nucleus | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G19120 | Predictedinteraction predictiontwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic SuppressionCo-purificationinterologs mapping | FSW = 0.4139
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G03870 | Predictedtwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic EnhancementColocalizationinterologs mappinginteraction predictionCo-expression | FSW = 0.4707
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT4G30220 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1613
| Class C:nucleus | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
AT3G59810 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1033
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT2G24490 | PredictedPhenotypic Suppression | FSW = 0.1208
| Class C:nucleus | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT2G41500 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1743
| Class C:nucleus | EMB2776 NUCLEOTIDE BINDING |
AT3G44530 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1307
| Class C:nucleus | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G35910 | PredictedPhenotypic Suppression | FSW = 0.1399
| Class C:nucleus | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT5G27720 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.1702
| Class C:nucleus | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT1G03330 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MSinterologs mappingCo-expression | FSW = 0.2091
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
AT1G76860 | Predictedinteraction predictionAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridAffinity Capture-MSinterologs mapping | FSW = 0.2073
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G21190 | Predictedtwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.2006
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G20580 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1653
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G28060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1503
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
AT1G03190 | PredictedPhenotypic Suppression | FSW = 0.0853
| Class C:nucleus | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT2G47620 | PredictedPhenotypic Enhancement | FSW = 0.0718
| Class C:nucleus | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT1G04510 | PredictedCo-purificationCo-expression | FSW = 0.1107
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G15550 | PredictedAffinity Capture-MS | FSW = 0.0057
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G18620 | PredictedPhenotypic Enhancement | FSW = 0.0290
| Class C:nucleus | CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
AT5G48870 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingPhylogenetic profile methodCo-expression | FSW = 0.1670
| Class C:nucleus | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING |
AT1G07370 | PredictedPhenotypic Suppression | FSW = 0.1738
| Class C:nucleus | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT1G53165 | Predictedsynthetic growth defect | FSW = 0.0534
| Class C:nucleus | ATMAP4K ALPHA1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT2G15430 | PredictedPhenotypic Enhancement | FSW = 0.1479
| Class C:nucleus | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G24500 | PredictedPhenotypic Suppression | FSW = 0.0734
| Class C:nucleus | FZF TRANSCRIPTION FACTOR |
AT2G36740 | PredictedPhenotypic Enhancement | FSW = 0.2576
| Class C:nucleus | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G38560 | PredictedPhenotypic Enhancement | FSW = 0.1483
| Class C:nucleus | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT3G19210 | Predictedsynthetic growth defect | FSW = 0.1476
| Class C:nucleus | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G20010 | PredictedPhenotypic Enhancement | FSW = 0.0750
| Class C:nucleus | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT4G39160 | PredictedbiochemicalReconstituted ComplexSynthetic RescuebiochemicalReconstituted ComplexSynthetic RescueSynthetic Lethality | FSW = 0.0621
| Class C:nucleus | DNA BINDING / TRANSCRIPTION FACTOR |
AT1G64790 | PredictedPhenotypic Enhancement | FSW = 0.0846
| Unknown | BINDING |
AT3G22110 | PredictedPhenotypic Suppression | FSW = 0.0535
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G30390 | Predictedco-fractionationCo-fractionation | FSW = 0.0342
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT1G65240 | PredictedAffinity Capture-MS | FSW = 0.0128
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT5G16150 | PredictedAffinity Capture-MS | FSW = 0.0263
| Unknown | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G80070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1326
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT3G55200 | PredictedAffinity Capture-MS | FSW = 0.0556
| Unknown | SPLICING FACTOR PUTATIVE |
AT2G33340 | PredictedCo-purification | FSW = 0.0975
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G58230 | PredictedPhenotypic Enhancement | FSW = 0.0448
| Unknown | MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING |
AT4G32360 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | NADP ADRENODOXIN-LIKE FERREDOXIN REDUCTASE |
AT3G12110 | PredictedPhenotypic Enhancement | FSW = 0.0403
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G23630 | PredictedPhenotypic Enhancement | FSW = 0.0574
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G11890 | PredictedPhenotypic Enhancement | FSW = 0.1452
| Unknown | SEC22 TRANSPORTER |
AT1G05570 | Predictedinteraction prediction | FSW = 0.0261
| Unknown | CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT5G26340 | PredictedSynthetic Lethality | FSW = 0.0329
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G02490 | PredictedAffinity Capture-MS | FSW = 0.0133
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT1G12110 | PredictedSynthetic Lethality | FSW = 0.0063
| Unknown | NRT11 NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT5G59950 | PredictedAffinity Capture-MS | FSW = 0.0124
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G59900 | PredictedPhenotypic Enhancement | FSW = 0.0967
| Unknown | AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT2G47510 | PredictedAffinity Capture-MS | FSW = 0.0071
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT1G75510 | PredictedPhenotypic Enhancement | FSW = 0.1757
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT4G33730 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mappingPhenotypic Enhancement | FSW = 0.0641
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G47690 | PredictedSynthetic Lethality | FSW = 0.1309
| Unknown | ATEB1A MICROTUBULE BINDING |
AT2G31970 | Predictedsynthetic growth defect | FSW = 0.1300
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G57450 | Predictedsynthetic growth defect | FSW = 0.1082
| Unknown | XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT5G66130 | PredictedPhenotypic Enhancement | FSW = 0.0854
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT1G62800 | PredictedAffinity Capture-MS | FSW = 0.0089
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT3G25980 | PredictedPhenotypic Enhancement | FSW = 0.0368
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT5G19910 | PredictedPhenotypic Enhancement | FSW = 0.1983
| Unknown | SOH1 FAMILY PROTEIN |
AT5G20850 | Predictedsynthetic growth defect | FSW = 0.0886
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT5G54260 | Predictedsynthetic growth defect | FSW = 0.1410
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G60170 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1921
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
AT1G79730 | PredictedPhenotypic Enhancement | FSW = 0.1347
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT2G27970 | PredictedPhenotypic Enhancement | FSW = 0.0428
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G32765 | PredictedSynthetic LethalitySynthetic Lethalityinterologs mappingAffinity Capture-WesternSynthetic Lethality | FSW = 0.0363
| Unknown | SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) PROTEIN TAG |
AT1G04730 | PredictedPhenotypic Enhancement | FSW = 0.1485
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G05910 | PredictedPhenotypic Enhancement | FSW = 0.1063
| Unknown | CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED |
AT1G08260 | PredictedAffinity Capture-MS | FSW = 0.0312
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.0138
| Unknown | UNKNOWN PROTEIN |
AT1G34150 | PredictedPhenotypic Enhancement | FSW = 0.1344
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT1G51710 | PredictedPhenotypic Enhancement | FSW = 0.1459
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G52740 | PredictedPhenotypic Enhancement | FSW = 0.1858
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G66740 | PredictedSynthetic LethalityPhenotypic EnhancementCo-expression | FSW = 0.1864
| Unknown | SGA2 |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0934
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G13680 | PredictedSynthetic Lethality | FSW = 0.0300
| Unknown | CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.0080
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G24050 | PredictedAffinity Capture-MS | FSW = 0.0049
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0122
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G34180 | PredictedAffinity Capture-MS | FSW = 0.0061
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G44150 | PredictedPhenotypic Enhancement | FSW = 0.1264
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT2G46070 | PredictedAffinity Capture-Western | FSW = 0.0120
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT3G05760 | PredictedAffinity Capture-MS | FSW = 0.0834
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G06460 | PredictedAffinity Capture-MS | FSW = 0.0252
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G18860 | PredictedPhenotypic Enhancement | FSW = 0.2091
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22590 | PredictedSynthetic LethalitySynthetic Lethalityinteraction predictionCo-expression | FSW = 0.1956
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT3G24030 | PredictedPhenotypic Enhancement | FSW = 0.0639
| Unknown | HYDROXYETHYLTHIAZOLE KINASE FAMILY PROTEIN |
AT3G42660 | PredictedPhenotypic Suppression | FSW = 0.2392
| Unknown | NUCLEOTIDE BINDING |
AT3G46320 | PredictedPhenotypic Enhancement | FSW = 0.0528
| Unknown | HISTONE H4 |
AT3G46960 | PredictedPhenotypic Enhancement | FSW = 0.0379
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT3G51880 | PredictedAffinity Capture-MS | FSW = 0.0037
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G58560 | PredictedSynthetic Lethality | FSW = 0.1490
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT3G62960 | PredictedAffinity Capture-MS | FSW = 0.0032
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT4G00660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0801
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT4G03430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1113
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT4G25120 | Predictedsynthetic growth defect | FSW = 0.0807
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT4G32720 | PredictedSynthetic Lethality | FSW = 0.0255
| Unknown | ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1) RNA BINDING |
AT4G37680 | PredictedAffinity Capture-MS | FSW = 0.0070
| Unknown | HHP4 (HEPTAHELICAL PROTEIN 4) RECEPTOR |
AT4G38330 | PredictedPhenotypic Enhancement | FSW = 0.0057
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S HLY-III RELATED (INTERPROIPR004254) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G382901) HAS 8 BLAST HITS TO 8 PROTEINS IN 1 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 8 VIRUSES - 0 OTHER EUKARYOTES - 0 (SOURCE NCBI BLINK) |
AT5G02880 | PredictedPhenotypic Enhancement | FSW = 0.0204
| Unknown | UPL4 UBIQUITIN-PROTEIN LIGASE |
AT5G09230 | PredictedPhenotypic Enhancement | FSW = 0.0624
| Unknown | SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING |
AT5G10260 | PredictedPhenotypic Suppression | FSW = 0.1280
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G10960 | PredictedSynthetic Lethality | FSW = 0.1140
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.1212
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G21170 | PredictedAffinity Capture-MS | FSW = 0.0091
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
AT5G26680 | Predictedsynthetic growth defectCo-expression | FSW = 0.1813
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G41770 | PredictedAffinity Capture-MS | FSW = 0.0622
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT5G45600 | PredictedPhenotypic Enhancement | FSW = 0.2491
| Unknown | GAS41 PROTEIN BINDING |
AT5G48640 | PredictedPhenotypic Enhancement | FSW = 0.1086
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G50320 | PredictedPhenotypic Enhancement | FSW = 0.0751
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT5G52210 | PredictedPhenotypic Enhancement | FSW = 0.0302
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT5G55310 | PredictedPhenotypic Enhancement | FSW = 0.0882
| Unknown | TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I |
AT5G61770 | PredictedPhenotypic Suppression | FSW = 0.0249
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
AT5G63610 | PredictedPhenotypic Enhancement | FSW = 0.0887
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G63670 | PredictedPhenotypic Enhancement | FSW = 0.1063
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT3G12690 | PredictedSynthetic Lethality | FSW = 0.0026
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G13700 | PredictedPhenotypic Suppression | FSW = 0.0106
| Unknown | RNA-BINDING PROTEIN PUTATIVE |
AT3G27730 | Predictedinteraction predictiontwo hybrid | FSW = 0.0155
| Unknown | RCK (ROCK-N-ROLLERS) ATP BINDING / ATP-DEPENDENT HELICASE/ DNA HELICASE |
AT3G54380 | PredictedPhenotypic Enhancement | FSW = 0.1809
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT3G55220 | PredictedAffinity Capture-MS | FSW = 0.1163
| Unknown | SPLICING FACTOR PUTATIVE |
AT5G40040 | Predictedinterologs mapping | FSW = 0.0077
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2E) |
AT5G41700 | PredictedPhenotypic Enhancement | FSW = 0.0947
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G57190 | PredictedPhenotypic Enhancement | FSW = 0.0516
| Unknown | PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE |
AT5G67320 | PredictedPhenotypic Enhancement | FSW = 0.0688
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
AT2G45810 | PredictedAffinity Capture-MS | FSW = 0.0576
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G79880 | PredictedSynthetic Lethality | FSW = 0.0278
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
AT1G15920 | PredictedSynthetic Lethality | FSW = 0.1074
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G15770 | Predictedinteraction prediction | FSW = 0.0829
| Unknown | ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454