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AT2G43810 - ( small nuclear ribonucleoprotein F putative / U6 snRNA-associated Sm-like protein putative / Sm protein F putative )

138 Proteins interacs with AT2G43810

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G27090	Predicted Phenotypic Enhancement	FSW = 0.0717	Class C: nucleus	60S RIBOSOMAL PROTEIN L14 (RPL14B)
AT1G20960	Predicted Co-purification Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.1772	Class C: nucleus	EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G12780	Predicted Protein-RNA	FSW = 0.0655	Class C: nucleus	PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE
AT1G09760	Predicted Affinity Capture-MS	FSW = 0.1115	Class C: nucleus	U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING
AT1G55920	Predicted Phenotypic Enhancement	FSW = 0.0350	Class C: nucleus	ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT4G26720	Predicted Phenotypic Enhancement	FSW = 0.1072	Class C: nucleus	PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G08290	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1969	Class C: nucleus	YLS8 CATALYTIC
AT2G44680	Predicted Phenotypic Enhancement	FSW = 0.1344	Class C: nucleus	CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT5G67270	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.1663	Class C: nucleus	ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT1G02680	Predicted Phenotypic Enhancement	FSW = 0.1107	Class C: nucleus	TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT2G47640	Predicted two hybrid Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1200	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT3G12810	Predicted Phenotypic Enhancement	FSW = 0.2684	Class C: nucleus	PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G19120	Predicted interaction prediction two hybrid two hybrid Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Phenotypic Suppression Co-purification interologs mapping	FSW = 0.4139	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870	Predicted two hybrid two hybrid Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Phenotypic Enhancement Colocalization interologs mapping interaction prediction Co-expression	FSW = 0.4707	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT4G30220	Predicted Phylogenetic profile method Co-expression	FSW = 0.1613	Class C: nucleus	RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
AT3G59810	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.1033	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT2G24490	Predicted Phenotypic Suppression	FSW = 0.1208	Class C: nucleus	RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT2G41500	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.1743	Class C: nucleus	EMB2776 NUCLEOTIDE BINDING
AT3G44530	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.1307	Class C: nucleus	HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G35910	Predicted Phenotypic Suppression	FSW = 0.1399	Class C: nucleus	3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT5G27720	Predicted interaction prediction two hybrid two hybrid two hybrid Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interologs mapping	FSW = 0.1702	Class C: nucleus	EMB1644 (EMBRYO DEFECTIVE 1644)
AT1G03330	Predicted interaction prediction two hybrid two hybrid two hybrid Affinity Capture-MS Affinity Capture-MS interologs mapping Co-expression	FSW = 0.2091	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE
AT1G76860	Predicted interaction prediction Affinity Capture-MS two hybrid Affinity Capture-MS two hybrid Affinity Capture-MS interologs mapping	FSW = 0.2073	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G21190	Predicted two hybrid two hybrid Affinity Capture-MS Affinity Capture-MS two hybrid Affinity Capture-MS	FSW = 0.2006	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G20580	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1653	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G28060	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.1503	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN
AT1G03190	Predicted Phenotypic Suppression	FSW = 0.0853	Class C: nucleus	UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT2G47620	Predicted Phenotypic Enhancement	FSW = 0.0718	Class C: nucleus	ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT1G04510	Predicted Co-purification Co-expression	FSW = 0.1107	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G15550	Predicted Affinity Capture-MS	FSW = 0.0057	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G18620	Predicted Phenotypic Enhancement	FSW = 0.0290	Class C: nucleus	CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING
AT5G48870	Predicted interaction prediction two hybrid two hybrid two hybrid two hybrid Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interologs mapping Phylogenetic profile method Co-expression	FSW = 0.1670	Class C: nucleus	SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING
AT1G07370	Predicted Phenotypic Suppression	FSW = 0.1738	Class C: nucleus	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT1G53165	Predicted synthetic growth defect	FSW = 0.0534	Class C: nucleus	ATMAP4K ALPHA1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT2G15430	Predicted Phenotypic Enhancement	FSW = 0.1479	Class C: nucleus	NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G24500	Predicted Phenotypic Suppression	FSW = 0.0734	Class C: nucleus	FZF TRANSCRIPTION FACTOR
AT2G36740	Predicted Phenotypic Enhancement	FSW = 0.2576	Class C: nucleus	SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT2G38560	Predicted Phenotypic Enhancement	FSW = 0.1483	Class C: nucleus	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT3G19210	Predicted synthetic growth defect	FSW = 0.1476	Class C: nucleus	ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G20010	Predicted Phenotypic Enhancement	FSW = 0.0750	Class C: nucleus	SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT4G39160	Predicted biochemical Reconstituted Complex Synthetic Rescue biochemical Reconstituted Complex Synthetic Rescue Synthetic Lethality	FSW = 0.0621	Class C: nucleus	DNA BINDING / TRANSCRIPTION FACTOR
AT1G64790	Predicted Phenotypic Enhancement	FSW = 0.0846	Unknown	BINDING
AT3G22110	Predicted Phenotypic Suppression	FSW = 0.0535	Unknown	PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G30390	Predicted co-fractionation Co-fractionation	FSW = 0.0342	Unknown	AMINO ACID TRANSPORTER FAMILY PROTEIN
AT1G65240	Predicted Affinity Capture-MS	FSW = 0.0128	Unknown	ASPARTYL PROTEASE FAMILY PROTEIN
AT5G16150	Predicted Affinity Capture-MS	FSW = 0.0263	Unknown	PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G80070	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1326	Unknown	SUS2 (ABNORMAL SUSPENSOR 2)
AT3G55200	Predicted Affinity Capture-MS	FSW = 0.0556	Unknown	SPLICING FACTOR PUTATIVE
AT2G33340	Predicted Co-purification	FSW = 0.0975	Unknown	NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G58230	Predicted Phenotypic Enhancement	FSW = 0.0448	Unknown	MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING
AT4G32360	Predicted Affinity Capture-MS	FSW = 0.0224	Unknown	NADP ADRENODOXIN-LIKE FERREDOXIN REDUCTASE
AT3G12110	Predicted Phenotypic Enhancement	FSW = 0.0403	Unknown	ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G23630	Predicted Phenotypic Enhancement	FSW = 0.0574	Unknown	ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT1G11890	Predicted Phenotypic Enhancement	FSW = 0.1452	Unknown	SEC22 TRANSPORTER
AT1G05570	Predicted interaction prediction	FSW = 0.0261	Unknown	CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT5G26340	Predicted Synthetic Lethality	FSW = 0.0329	Unknown	MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT5G02490	Predicted Affinity Capture-MS	FSW = 0.0133	Unknown	HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2)
AT1G12110	Predicted Synthetic Lethality	FSW = 0.0063	Unknown	NRT11 NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER
AT5G59950	Predicted Affinity Capture-MS	FSW = 0.0124	Unknown	RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G59900	Predicted Phenotypic Enhancement	FSW = 0.0967	Unknown	AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)
AT2G47510	Predicted Affinity Capture-MS	FSW = 0.0071	Unknown	FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE
AT1G75510	Predicted Phenotypic Enhancement	FSW = 0.1757	Unknown	TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN
AT4G33730	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western interologs mapping Phenotypic Enhancement	FSW = 0.0641	Unknown	PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT3G47690	Predicted Synthetic Lethality	FSW = 0.1309	Unknown	ATEB1A MICROTUBULE BINDING
AT2G31970	Predicted synthetic growth defect	FSW = 0.1300	Unknown	RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G57450	Predicted synthetic growth defect	FSW = 0.1082	Unknown	XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT5G66130	Predicted Phenotypic Enhancement	FSW = 0.0854	Unknown	ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)
AT1G62800	Predicted Affinity Capture-MS	FSW = 0.0089	Unknown	ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS
AT3G25980	Predicted Phenotypic Enhancement	FSW = 0.0368	Unknown	MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT5G19910	Predicted Phenotypic Enhancement	FSW = 0.1983	Unknown	SOH1 FAMILY PROTEIN
AT5G20850	Predicted synthetic growth defect	FSW = 0.0886	Unknown	ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT5G54260	Predicted synthetic growth defect	FSW = 0.1410	Unknown	MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G60170	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1921	Unknown	EMB1220 (EMBRYO DEFECTIVE 1220)
AT1G79730	Predicted Phenotypic Enhancement	FSW = 0.1347	Unknown	ELF7 (EARLY FLOWERING 7)
AT2G27970	Predicted Phenotypic Enhancement	FSW = 0.0428	Unknown	CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G32765	Predicted Synthetic Lethality Synthetic Lethality interologs mapping Affinity Capture-Western Synthetic Lethality	FSW = 0.0363	Unknown	SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) PROTEIN TAG
AT1G04730	Predicted Phenotypic Enhancement	FSW = 0.1485	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT1G05910	Predicted Phenotypic Enhancement	FSW = 0.1063	Unknown	CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED
AT1G08260	Predicted Affinity Capture-MS	FSW = 0.0312	Unknown	TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT1G26140	Predicted Affinity Capture-MS	FSW = 0.0138	Unknown	UNKNOWN PROTEIN
AT1G34150	Predicted Phenotypic Enhancement	FSW = 0.1344	Unknown	TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT1G51710	Predicted Phenotypic Enhancement	FSW = 0.1459	Unknown	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G52740	Predicted Phenotypic Enhancement	FSW = 0.1858	Unknown	HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G66740	Predicted Synthetic Lethality Phenotypic Enhancement Co-expression	FSW = 0.1864	Unknown	SGA2
AT1G80410	Predicted synthetic growth defect	FSW = 0.0934	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G13680	Predicted Synthetic Lethality	FSW = 0.0300	Unknown	CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE
AT2G20290	Predicted Affinity Capture-MS	FSW = 0.0080	Unknown	XIG MOTOR/ PROTEIN BINDING
AT2G24050	Predicted Affinity Capture-MS	FSW = 0.0049	Unknown	MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN
AT2G31020	Predicted Affinity Capture-MS	FSW = 0.0122	Unknown	ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT2G34180	Predicted Affinity Capture-MS	FSW = 0.0061	Unknown	CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G44150	Predicted Phenotypic Enhancement	FSW = 0.1264	Unknown	ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT2G46070	Predicted Affinity Capture-Western	FSW = 0.0120	Unknown	MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE
AT3G05760	Predicted Affinity Capture-MS	FSW = 0.0834	Unknown	NUCLEIC ACID BINDING / ZINC ION BINDING
AT3G06460	Predicted Affinity Capture-MS	FSW = 0.0252	Unknown	GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G18860	Predicted Phenotypic Enhancement	FSW = 0.2091	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G22590	Predicted Synthetic Lethality Synthetic Lethality interaction prediction Co-expression	FSW = 0.1956	Unknown	RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G24030	Predicted Phenotypic Enhancement	FSW = 0.0639	Unknown	HYDROXYETHYLTHIAZOLE KINASE FAMILY PROTEIN
AT3G42660	Predicted Phenotypic Suppression	FSW = 0.2392	Unknown	NUCLEOTIDE BINDING
AT3G46320	Predicted Phenotypic Enhancement	FSW = 0.0528	Unknown	HISTONE H4
AT3G46960	Predicted Phenotypic Enhancement	FSW = 0.0379	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT3G51880	Predicted Affinity Capture-MS	FSW = 0.0037	Unknown	HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT3G58560	Predicted Synthetic Lethality	FSW = 0.1490	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT3G62960	Predicted Affinity Capture-MS	FSW = 0.0032	Unknown	GLUTAREDOXIN FAMILY PROTEIN
AT4G00660	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0801	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT4G03430	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1113	Unknown	EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM
AT4G25120	Predicted synthetic growth defect	FSW = 0.0807	Unknown	ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT4G32720	Predicted Synthetic Lethality	FSW = 0.0255	Unknown	ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1) RNA BINDING
AT4G37680	Predicted Affinity Capture-MS	FSW = 0.0070	Unknown	HHP4 (HEPTAHELICAL PROTEIN 4) RECEPTOR
AT4G38330	Predicted Phenotypic Enhancement	FSW = 0.0057	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S HLY-III RELATED (INTERPROIPR004254) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G382901) HAS 8 BLAST HITS TO 8 PROTEINS IN 1 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 8 VIRUSES - 0 OTHER EUKARYOTES - 0 (SOURCE NCBI BLINK)
AT5G02880	Predicted Phenotypic Enhancement	FSW = 0.0204	Unknown	UPL4 UBIQUITIN-PROTEIN LIGASE
AT5G09230	Predicted Phenotypic Enhancement	FSW = 0.0624	Unknown	SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING
AT5G10260	Predicted Phenotypic Suppression	FSW = 0.1280	Unknown	ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G10960	Predicted Synthetic Lethality	FSW = 0.1140	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G13780	Predicted synthetic growth defect	FSW = 0.1212	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G21170	Predicted Affinity Capture-MS	FSW = 0.0091	Unknown	5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE
AT5G26680	Predicted synthetic growth defect Co-expression	FSW = 0.1813	Unknown	ENDONUCLEASE PUTATIVE
AT5G41770	Predicted Affinity Capture-MS	FSW = 0.0622	Unknown	CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT5G45600	Predicted Phenotypic Enhancement	FSW = 0.2491	Unknown	GAS41 PROTEIN BINDING
AT5G48640	Predicted Phenotypic Enhancement	FSW = 0.1086	Unknown	CYCLIN FAMILY PROTEIN
AT5G50320	Predicted Phenotypic Enhancement	FSW = 0.0751	Unknown	ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G52210	Predicted Phenotypic Enhancement	FSW = 0.0302	Unknown	ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING
AT5G55310	Predicted Phenotypic Enhancement	FSW = 0.0882	Unknown	TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I
AT5G61770	Predicted Phenotypic Suppression	FSW = 0.0249	Unknown	PPAN (PETER PAN-LIKE PROTEIN)
AT5G63610	Predicted Phenotypic Enhancement	FSW = 0.0887	Unknown	CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G63670	Predicted Phenotypic Enhancement	FSW = 0.1063	Unknown	SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT3G12690	Predicted Synthetic Lethality	FSW = 0.0026	Unknown	AGC15 (AGC KINASE 15) KINASE
AT3G13700	Predicted Phenotypic Suppression	FSW = 0.0106	Unknown	RNA-BINDING PROTEIN PUTATIVE
AT3G27730	Predicted interaction prediction two hybrid	FSW = 0.0155	Unknown	RCK (ROCK-N-ROLLERS) ATP BINDING / ATP-DEPENDENT HELICASE/ DNA HELICASE
AT3G54380	Predicted Phenotypic Enhancement	FSW = 0.1809	Unknown	SAC3/GANP FAMILY PROTEIN
AT3G55220	Predicted Affinity Capture-MS	FSW = 0.1163	Unknown	SPLICING FACTOR PUTATIVE
AT5G40040	Predicted interologs mapping	FSW = 0.0077	Unknown	60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2E)
AT5G41700	Predicted Phenotypic Enhancement	FSW = 0.0947	Unknown	UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G57190	Predicted Phenotypic Enhancement	FSW = 0.0516	Unknown	PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE
AT5G67320	Predicted Phenotypic Enhancement	FSW = 0.0688	Unknown	HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15)
AT2G45810	Predicted Affinity Capture-MS	FSW = 0.0576	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G79880	Predicted Synthetic Lethality	FSW = 0.0278	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT1G15920	Predicted Synthetic Lethality	FSW = 0.1074	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G15770	Predicted interaction prediction	FSW = 0.0829	Unknown	ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE

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Fasta sequences:

Proteins

DNA

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT2G43810 - ( small nuclear ribonucleoprotein F putative / U6 snRNA-associated Sm-like protein putative / Sm protein F putative )

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